Hb_003030_010

Information

Type -
Description -
Location Contig3030: 7618-32437
Sequence    

Annotation

kegg
ID rcu:RCOM_0845880
description Phosphatidylinositol transfer protein PDR16, putative
nr
ID XP_012070333.1
description PREDICTED: random slug protein 5-like [Jatropha curcas]
swissprot
ID Q55CU8
description Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1
trembl
ID A0A067KTR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02636 PE=4 SV=1
Gene Ontology
ID GO:0005622
description random slug protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31960: 15249-31322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003030_010 0.0 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
2 Hb_187959_010 0.0757359455 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
3 Hb_004129_010 0.0968065736 - - aspartate aminotransferase, putative [Ricinus communis]
4 Hb_007229_050 0.1087697385 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
5 Hb_001754_050 0.1148766159 - - protein arginine n-methyltransferase, putative [Ricinus communis]
6 Hb_029584_100 0.1225498765 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
7 Hb_143766_080 0.1251455293 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
8 Hb_012053_020 0.1251639064 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
9 Hb_001054_060 0.1303253422 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
10 Hb_009535_030 0.1312329995 - - CP2 [Hevea brasiliensis]
11 Hb_000339_020 0.1345775732 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
12 Hb_000622_060 0.1349343706 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
13 Hb_000157_140 0.1366321762 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_001247_270 0.1367523739 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
15 Hb_030312_030 0.1381170965 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
16 Hb_005588_120 0.1384184762 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006185_030 0.1393739496 - - threonine synthase, putative [Ricinus communis]
18 Hb_000941_120 0.1396332107 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
19 Hb_098533_010 0.1400871055 - - hypothetical protein L484_003492 [Morus notabilis]
20 Hb_000768_150 0.1410374382 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_003030_010 Hb_003030_010 Hb_187959_010 Hb_187959_010 Hb_003030_010--Hb_187959_010 Hb_004129_010 Hb_004129_010 Hb_003030_010--Hb_004129_010 Hb_007229_050 Hb_007229_050 Hb_003030_010--Hb_007229_050 Hb_001754_050 Hb_001754_050 Hb_003030_010--Hb_001754_050 Hb_029584_100 Hb_029584_100 Hb_003030_010--Hb_029584_100 Hb_143766_080 Hb_143766_080 Hb_003030_010--Hb_143766_080 Hb_001054_060 Hb_001054_060 Hb_187959_010--Hb_001054_060 Hb_004007_200 Hb_004007_200 Hb_187959_010--Hb_004007_200 Hb_007590_100 Hb_007590_100 Hb_187959_010--Hb_007590_100 Hb_006414_010 Hb_006414_010 Hb_187959_010--Hb_006414_010 Hb_007134_030 Hb_007134_030 Hb_187959_010--Hb_007134_030 Hb_005588_120 Hb_005588_120 Hb_004129_010--Hb_005588_120 Hb_004129_010--Hb_001754_050 Hb_004129_010--Hb_007229_050 Hb_000256_160 Hb_000256_160 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_006185_030 Hb_006185_030 Hb_007229_050--Hb_006185_030 Hb_001235_130 Hb_001235_130 Hb_007229_050--Hb_001235_130 Hb_098533_010 Hb_098533_010 Hb_007229_050--Hb_098533_010 Hb_007229_050--Hb_000157_140 Hb_007229_050--Hb_000256_160 Hb_001754_050--Hb_143766_080 Hb_000392_250 Hb_000392_250 Hb_001754_050--Hb_000392_250 Hb_004883_020 Hb_004883_020 Hb_001754_050--Hb_004883_020 Hb_000057_130 Hb_000057_130 Hb_001754_050--Hb_000057_130 Hb_004218_130 Hb_004218_130 Hb_001754_050--Hb_004218_130 Hb_009535_030 Hb_009535_030 Hb_029584_100--Hb_009535_030 Hb_001247_270 Hb_001247_270 Hb_029584_100--Hb_001247_270 Hb_029584_100--Hb_007229_050 Hb_019654_110 Hb_019654_110 Hb_029584_100--Hb_019654_110 Hb_029584_100--Hb_001235_130 Hb_029584_100--Hb_098533_010 Hb_003710_020 Hb_003710_020 Hb_143766_080--Hb_003710_020 Hb_143766_080--Hb_004129_010 Hb_004522_030 Hb_004522_030 Hb_143766_080--Hb_004522_030 Hb_000116_240 Hb_000116_240 Hb_143766_080--Hb_000116_240 Hb_143766_080--Hb_004883_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0557015 4.09995 4.68791 8.83925 0.364005 0.442406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01929 1.013 1.11545 7.26603 7.45558

CAGE analysis