Hb_007134_030

Information

Type -
Description -
Location Contig7134: 74438-93065
Sequence    

Annotation

kegg
ID pop:POPTR_0004s19340g
description POPTRDRAFT_1077146; kinase family protein
nr
ID XP_012087677.1
description PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
swissprot
ID Q944A7
description Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1
trembl
ID A0A067JLJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25333 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at4g35230

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55387: 74460-93004 , PASA_asmbl_55388: 74460-82289 , PASA_asmbl_55389: 88864-89025
cDNA
(Sanger)
(ID:Location)		 011_F19.ab1: 89859-93004 , 013_H06.ab1: 89980-92948 , 040_F21.ab1: 89716-93004

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007134_030 0.0 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
2 Hb_007416_290 0.1256056733 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
3 Hb_008143_040 0.1256556726 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
4 Hb_187959_010 0.1273468526 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
5 Hb_004032_110 0.1304198741 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
6 Hb_009545_030 0.1378688164 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
7 Hb_001439_010 0.139525335 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
8 Hb_000970_020 0.1406346681 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
9 Hb_008566_080 0.1437552764 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
10 Hb_001159_170 0.1445579878 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
11 Hb_007590_100 0.1471129288 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
12 Hb_000077_400 0.1490228207 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_117639_010 0.1492885743 - - hypothetical protein B456_013G070100 [Gossypium raimondii]
14 Hb_000680_070 0.1531681266 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
15 Hb_004667_030 0.1532837225 - - hypothetical protein VITISV_034568 [Vitis vinifera]
16 Hb_002448_020 0.1544879003 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
17 Hb_022250_160 0.1555894448 - - respiratory burst oxidase A [Manihot esculenta]
18 Hb_003030_010 0.1561639092 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
19 Hb_005332_050 0.1601352574 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
20 Hb_065521_010 0.1629230462 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]

Gene co-expression network

sample Hb_007134_030 Hb_007134_030 Hb_007416_290 Hb_007416_290 Hb_007134_030--Hb_007416_290 Hb_008143_040 Hb_008143_040 Hb_007134_030--Hb_008143_040 Hb_187959_010 Hb_187959_010 Hb_007134_030--Hb_187959_010 Hb_004032_110 Hb_004032_110 Hb_007134_030--Hb_004032_110 Hb_009545_030 Hb_009545_030 Hb_007134_030--Hb_009545_030 Hb_001439_010 Hb_001439_010 Hb_007134_030--Hb_001439_010 Hb_022250_160 Hb_022250_160 Hb_007416_290--Hb_022250_160 Hb_007416_290--Hb_008143_040 Hb_007416_290--Hb_009545_030 Hb_004079_100 Hb_004079_100 Hb_007416_290--Hb_004079_100 Hb_000946_070 Hb_000946_070 Hb_007416_290--Hb_000946_070 Hb_008143_040--Hb_009545_030 Hb_117639_010 Hb_117639_010 Hb_008143_040--Hb_117639_010 Hb_000057_100 Hb_000057_100 Hb_008143_040--Hb_000057_100 Hb_000115_250 Hb_000115_250 Hb_008143_040--Hb_000115_250 Hb_003030_010 Hb_003030_010 Hb_187959_010--Hb_003030_010 Hb_001054_060 Hb_001054_060 Hb_187959_010--Hb_001054_060 Hb_004007_200 Hb_004007_200 Hb_187959_010--Hb_004007_200 Hb_007590_100 Hb_007590_100 Hb_187959_010--Hb_007590_100 Hb_006414_010 Hb_006414_010 Hb_187959_010--Hb_006414_010 Hb_002949_020 Hb_002949_020 Hb_004032_110--Hb_002949_020 Hb_004032_110--Hb_001439_010 Hb_036388_010 Hb_036388_010 Hb_004032_110--Hb_036388_010 Hb_004032_110--Hb_007590_100 Hb_002397_050 Hb_002397_050 Hb_004032_110--Hb_002397_050 Hb_001159_170 Hb_001159_170 Hb_009545_030--Hb_001159_170 Hb_004324_030 Hb_004324_030 Hb_009545_030--Hb_004324_030 Hb_007138_030 Hb_007138_030 Hb_009545_030--Hb_007138_030 Hb_006469_090 Hb_006469_090 Hb_001439_010--Hb_006469_090 Hb_000680_070 Hb_000680_070 Hb_001439_010--Hb_000680_070 Hb_005663_090 Hb_005663_090 Hb_001439_010--Hb_005663_090 Hb_003607_140 Hb_003607_140 Hb_001439_010--Hb_003607_140 Hb_003879_020 Hb_003879_020 Hb_001439_010--Hb_003879_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110739 3.4704 5.94909 15.0534 0.0903987 0.0978919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00964 1.47796 0.209995 13.8742 12.8705

CAGE analysis