Hb_002949_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2949: 48305-50966
Sequence    

Annotation

kegg
ID pop:POPTR_0002s23650g
description POPTRDRAFT_710327; hypothetical protein
nr
ID XP_002301743.2
description hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
swissprot
ID Q9SRT2
description Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1
trembl
ID B9GND5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s23650g PE=4 SV=2
Gene Ontology
ID GO:0046983
description transcription factor bhlh77-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30842: 48286-51000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002949_020 0.0 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
2 Hb_004032_110 0.1029837739 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
3 Hb_002235_110 0.1046832721 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
4 Hb_001278_090 0.110981089 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
5 Hb_000054_030 0.113701102 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
6 Hb_006370_050 0.1198508862 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
7 Hb_074197_030 0.1232683429 - - unnamed protein product [Vitis vinifera]
8 Hb_005493_010 0.1285078126 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
9 Hb_005276_070 0.1302413497 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
10 Hb_048476_140 0.1379348658 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
11 Hb_000076_030 0.1385377778 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
12 Hb_161396_010 0.1415523207 - - hypothetical protein F383_26394 [Gossypium arboreum]
13 Hb_036388_010 0.1440526067 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
14 Hb_033152_110 0.146933194 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
15 Hb_000140_500 0.1487755221 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_002397_050 0.1488142959 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
17 Hb_001439_010 0.1518041968 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
18 Hb_001488_350 0.1518148682 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000181_220 0.1540976734 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
20 Hb_008725_090 0.1543138927 - - PREDICTED: uncharacterized protein LOC105642581 [Jatropha curcas]

Gene co-expression network

sample Hb_002949_020 Hb_002949_020 Hb_004032_110 Hb_004032_110 Hb_002949_020--Hb_004032_110 Hb_002235_110 Hb_002235_110 Hb_002949_020--Hb_002235_110 Hb_001278_090 Hb_001278_090 Hb_002949_020--Hb_001278_090 Hb_000054_030 Hb_000054_030 Hb_002949_020--Hb_000054_030 Hb_006370_050 Hb_006370_050 Hb_002949_020--Hb_006370_050 Hb_074197_030 Hb_074197_030 Hb_002949_020--Hb_074197_030 Hb_001439_010 Hb_001439_010 Hb_004032_110--Hb_001439_010 Hb_036388_010 Hb_036388_010 Hb_004032_110--Hb_036388_010 Hb_007590_100 Hb_007590_100 Hb_004032_110--Hb_007590_100 Hb_002397_050 Hb_002397_050 Hb_004032_110--Hb_002397_050 Hb_007134_030 Hb_007134_030 Hb_004032_110--Hb_007134_030 Hb_000612_090 Hb_000612_090 Hb_002235_110--Hb_000612_090 Hb_002235_110--Hb_074197_030 Hb_002235_110--Hb_000054_030 Hb_005276_070 Hb_005276_070 Hb_002235_110--Hb_005276_070 Hb_000805_010 Hb_000805_010 Hb_002235_110--Hb_000805_010 Hb_000181_220 Hb_000181_220 Hb_001278_090--Hb_000181_220 Hb_000140_500 Hb_000140_500 Hb_001278_090--Hb_000140_500 Hb_030827_010 Hb_030827_010 Hb_001278_090--Hb_030827_010 Hb_000416_090 Hb_000416_090 Hb_001278_090--Hb_000416_090 Hb_000130_480 Hb_000130_480 Hb_001278_090--Hb_000130_480 Hb_000054_030--Hb_002397_050 Hb_003226_200 Hb_003226_200 Hb_000054_030--Hb_003226_200 Hb_033152_110 Hb_033152_110 Hb_000054_030--Hb_033152_110 Hb_000054_030--Hb_074197_030 Hb_006370_050--Hb_002235_110 Hb_006370_050--Hb_001278_090 Hb_006370_050--Hb_074197_030 Hb_006370_050--Hb_005276_070 Hb_000621_030 Hb_000621_030 Hb_006370_050--Hb_000621_030 Hb_000352_280 Hb_000352_280 Hb_074197_030--Hb_000352_280 Hb_074197_030--Hb_000612_090 Hb_015141_010 Hb_015141_010 Hb_074197_030--Hb_015141_010 Hb_172426_060 Hb_172426_060 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.638578 1.52792 8.8087 10.8027 0.0899311 0.0381272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.564823 1.16658 0.771716 6.27159 14.1894

CAGE analysis