Hb_006370_050

Information

Type -
Description -
Location Contig6370: 28872-33444
Sequence    

Annotation

kegg
ID tcc:TCM_043329
description Pectin lyase-like superfamily protein isoform 1
nr
ID XP_007010024.1
description Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID Q93Z04
description Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1
trembl
ID A0A061FND9
description Pectate lyase OS=Theobroma cacao GN=TCM_043329 PE=3 SV=1
Gene Ontology
ID GO:0030570
description pectin lyase-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51973: 28752-33481 , PASA_asmbl_51975: 29141-29378 , PASA_asmbl_51976: 28828-28961
cDNA
(Sanger)
(ID:Location)		 009_L10.ab1: 29409-30666 , 044_K21.ab1: 29409-30668

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006370_050 0.0 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
2 Hb_002949_020 0.1198508862 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
3 Hb_002235_110 0.1314540681 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
4 Hb_001278_090 0.1332765978 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
5 Hb_074197_030 0.1426236512 - - unnamed protein product [Vitis vinifera]
6 Hb_005276_070 0.1433969213 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
7 Hb_000621_030 0.1603142903 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
8 Hb_000416_090 0.1627893026 - - Aquaporin NIP1.1, putative [Ricinus communis]
9 Hb_000237_120 0.1667439045 - - PREDICTED: beta-galactosidase 3-like [Jatropha curcas]
10 Hb_000612_090 0.1667458693 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
11 Hb_005977_060 0.1673513503 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000140_500 0.1682227912 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000163_110 0.1683437826 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
14 Hb_003849_070 0.1697642407 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
15 Hb_004032_110 0.1717338566 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
16 Hb_002248_010 0.17474318 - - PREDICTED: uncharacterized protein LOC105124180 [Populus euphratica]
17 Hb_000680_070 0.1747980317 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
18 Hb_006142_050 0.1751842737 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
19 Hb_036388_010 0.1753613987 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
20 Hb_010264_010 0.1756467296 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_006370_050 Hb_006370_050 Hb_002949_020 Hb_002949_020 Hb_006370_050--Hb_002949_020 Hb_002235_110 Hb_002235_110 Hb_006370_050--Hb_002235_110 Hb_001278_090 Hb_001278_090 Hb_006370_050--Hb_001278_090 Hb_074197_030 Hb_074197_030 Hb_006370_050--Hb_074197_030 Hb_005276_070 Hb_005276_070 Hb_006370_050--Hb_005276_070 Hb_000621_030 Hb_000621_030 Hb_006370_050--Hb_000621_030 Hb_004032_110 Hb_004032_110 Hb_002949_020--Hb_004032_110 Hb_002949_020--Hb_002235_110 Hb_002949_020--Hb_001278_090 Hb_000054_030 Hb_000054_030 Hb_002949_020--Hb_000054_030 Hb_002949_020--Hb_074197_030 Hb_000612_090 Hb_000612_090 Hb_002235_110--Hb_000612_090 Hb_002235_110--Hb_074197_030 Hb_002235_110--Hb_000054_030 Hb_002235_110--Hb_005276_070 Hb_000805_010 Hb_000805_010 Hb_002235_110--Hb_000805_010 Hb_000181_220 Hb_000181_220 Hb_001278_090--Hb_000181_220 Hb_000140_500 Hb_000140_500 Hb_001278_090--Hb_000140_500 Hb_030827_010 Hb_030827_010 Hb_001278_090--Hb_030827_010 Hb_000416_090 Hb_000416_090 Hb_001278_090--Hb_000416_090 Hb_000130_480 Hb_000130_480 Hb_001278_090--Hb_000130_480 Hb_000352_280 Hb_000352_280 Hb_074197_030--Hb_000352_280 Hb_074197_030--Hb_000612_090 Hb_015141_010 Hb_015141_010 Hb_074197_030--Hb_015141_010 Hb_172426_060 Hb_172426_060 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090 Hb_005977_060 Hb_005977_060 Hb_005276_070--Hb_005977_060 Hb_002662_110 Hb_002662_110 Hb_005276_070--Hb_002662_110 Hb_000441_050 Hb_000441_050 Hb_005276_070--Hb_000441_050 Hb_001365_020 Hb_001365_020 Hb_005276_070--Hb_001365_020 Hb_003053_070 Hb_003053_070 Hb_005276_070--Hb_003053_070 Hb_010632_020 Hb_010632_020 Hb_005276_070--Hb_010632_020 Hb_002001_030 Hb_002001_030 Hb_000621_030--Hb_002001_030 Hb_004881_070 Hb_004881_070 Hb_000621_030--Hb_004881_070 Hb_162174_010 Hb_162174_010 Hb_000621_030--Hb_162174_010 Hb_010264_010 Hb_010264_010 Hb_000621_030--Hb_010264_010 Hb_004374_160 Hb_004374_160 Hb_000621_030--Hb_004374_160 Hb_004116_050 Hb_004116_050 Hb_000621_030--Hb_004116_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32109 1.0864 12.24 15.1182 0.522029 0.0765357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.513987 0.185362 1.2158 9.82393 25.0339

CAGE analysis