Hb_000140_500

Information

Type -
Description -
Location Contig140: 492044-496188
Sequence    

Annotation

kegg
ID rcu:RCOM_0126140
description hypothetical protein
nr
ID AIU41663.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9LTR2
description Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis thaliana GN=TGD2 PE=2 SV=1
trembl
ID A0A097P9U1
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI15 PE=2 SV=1
Gene Ontology
ID GO:0006869
description protein trigalactosyldiacylglycerol chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10888: 494459-494608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_500 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_001278_090 0.1086478132 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
3 Hb_000181_220 0.1155148411 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
4 Hb_004162_140 0.1161313288 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
5 Hb_000621_030 0.1300485995 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
6 Hb_029639_030 0.133177859 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
7 Hb_001488_350 0.1364152163 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004032_110 0.1393787488 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
9 Hb_007101_140 0.1420325711 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
10 Hb_006142_050 0.1431993341 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
11 Hb_005332_050 0.1481475775 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
12 Hb_002949_020 0.1487755221 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
13 Hb_007894_080 0.1491705489 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000152_880 0.1502087422 - - -
15 Hb_000017_140 0.1505334192 - - polygalacturonase, putative [Ricinus communis]
16 Hb_000416_090 0.1533227428 - - Aquaporin NIP1.1, putative [Ricinus communis]
17 Hb_003052_080 0.1546303568 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
18 Hb_033772_060 0.1564123092 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010264_010 0.156951347 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
20 Hb_000836_030 0.1571948378 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]

Gene co-expression network

sample Hb_000140_500 Hb_000140_500 Hb_001278_090 Hb_001278_090 Hb_000140_500--Hb_001278_090 Hb_000181_220 Hb_000181_220 Hb_000140_500--Hb_000181_220 Hb_004162_140 Hb_004162_140 Hb_000140_500--Hb_004162_140 Hb_000621_030 Hb_000621_030 Hb_000140_500--Hb_000621_030 Hb_029639_030 Hb_029639_030 Hb_000140_500--Hb_029639_030 Hb_001488_350 Hb_001488_350 Hb_000140_500--Hb_001488_350 Hb_001278_090--Hb_000181_220 Hb_030827_010 Hb_030827_010 Hb_001278_090--Hb_030827_010 Hb_000416_090 Hb_000416_090 Hb_001278_090--Hb_000416_090 Hb_002949_020 Hb_002949_020 Hb_001278_090--Hb_002949_020 Hb_000130_480 Hb_000130_480 Hb_001278_090--Hb_000130_480 Hb_000181_220--Hb_029639_030 Hb_033772_060 Hb_033772_060 Hb_000181_220--Hb_033772_060 Hb_007101_140 Hb_007101_140 Hb_000181_220--Hb_007101_140 Hb_007894_080 Hb_007894_080 Hb_000181_220--Hb_007894_080 Hb_000181_220--Hb_001488_350 Hb_001405_040 Hb_001405_040 Hb_000181_220--Hb_001405_040 Hb_004162_140--Hb_007101_140 Hb_002783_180 Hb_002783_180 Hb_004162_140--Hb_002783_180 Hb_001675_040 Hb_001675_040 Hb_004162_140--Hb_001675_040 Hb_000152_880 Hb_000152_880 Hb_004162_140--Hb_000152_880 Hb_168561_010 Hb_168561_010 Hb_004162_140--Hb_168561_010 Hb_002001_030 Hb_002001_030 Hb_000621_030--Hb_002001_030 Hb_004881_070 Hb_004881_070 Hb_000621_030--Hb_004881_070 Hb_162174_010 Hb_162174_010 Hb_000621_030--Hb_162174_010 Hb_010264_010 Hb_010264_010 Hb_000621_030--Hb_010264_010 Hb_004374_160 Hb_004374_160 Hb_000621_030--Hb_004374_160 Hb_004116_050 Hb_004116_050 Hb_000621_030--Hb_004116_050 Hb_029639_030--Hb_000152_880 Hb_029639_030--Hb_033772_060 Hb_029639_030--Hb_007894_080 Hb_005892_040 Hb_005892_040 Hb_029639_030--Hb_005892_040 Hb_000977_030 Hb_000977_030 Hb_029639_030--Hb_000977_030 Hb_001488_350--Hb_004374_160 Hb_039435_010 Hb_039435_010 Hb_001488_350--Hb_039435_010 Hb_001488_350--Hb_000416_090 Hb_001488_350--Hb_000621_030 Hb_001488_350--Hb_001278_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.136397 0.879355 1.46887 0 0.0319753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0490797 0.0892442 0.77324 1.48623

CAGE analysis