Hb_001278_090

Information

Type -
Description -
Location Contig1278: 110365-112986
Sequence    

Annotation

kegg
ID rcu:RCOM_0576850
description ATP binding protein, putative (EC:1.3.1.74)
nr
ID XP_012075725.1
description PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
swissprot
ID Q9C9N5
description Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=2 SV=1
trembl
ID A0A067KRV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09313 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive leucine-rich repeat receptor-like protein kinase at1g66830

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08554: 110379-113071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_090 0.0 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
2 Hb_000181_220 0.1022692145 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
3 Hb_000140_500 0.1086478132 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_030827_010 0.109087024 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]
5 Hb_000416_090 0.1104241834 - - Aquaporin NIP1.1, putative [Ricinus communis]
6 Hb_002949_020 0.110981089 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
7 Hb_000130_480 0.1138124298 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
8 Hb_000836_030 0.1154743352 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
9 Hb_003145_010 0.1178897884 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
10 Hb_002635_010 0.1215082344 - - homogentisate phytyl transferase [Hevea brasiliensis]
11 Hb_005493_010 0.1223339111 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
12 Hb_004607_160 0.1225685211 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
13 Hb_006198_040 0.1246061748 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000380_140 0.1261283489 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
15 Hb_082550_010 0.1263824196 - - hypothetical protein CISIN_1g0081081mg, partial [Citrus sinensis]
16 Hb_006469_090 0.1313521198 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
17 Hb_004116_050 0.1326780485 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
18 Hb_029639_030 0.1331170004 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
19 Hb_006370_050 0.1332765978 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
20 Hb_000318_010 0.1338078912 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001278_090 Hb_001278_090 Hb_000181_220 Hb_000181_220 Hb_001278_090--Hb_000181_220 Hb_000140_500 Hb_000140_500 Hb_001278_090--Hb_000140_500 Hb_030827_010 Hb_030827_010 Hb_001278_090--Hb_030827_010 Hb_000416_090 Hb_000416_090 Hb_001278_090--Hb_000416_090 Hb_002949_020 Hb_002949_020 Hb_001278_090--Hb_002949_020 Hb_000130_480 Hb_000130_480 Hb_001278_090--Hb_000130_480 Hb_029639_030 Hb_029639_030 Hb_000181_220--Hb_029639_030 Hb_033772_060 Hb_033772_060 Hb_000181_220--Hb_033772_060 Hb_007101_140 Hb_007101_140 Hb_000181_220--Hb_007101_140 Hb_007894_080 Hb_007894_080 Hb_000181_220--Hb_007894_080 Hb_001488_350 Hb_001488_350 Hb_000181_220--Hb_001488_350 Hb_001405_040 Hb_001405_040 Hb_000181_220--Hb_001405_040 Hb_000140_500--Hb_000181_220 Hb_004162_140 Hb_004162_140 Hb_000140_500--Hb_004162_140 Hb_000621_030 Hb_000621_030 Hb_000140_500--Hb_000621_030 Hb_000140_500--Hb_029639_030 Hb_000140_500--Hb_001488_350 Hb_003145_010 Hb_003145_010 Hb_030827_010--Hb_003145_010 Hb_069696_020 Hb_069696_020 Hb_030827_010--Hb_069696_020 Hb_000627_050 Hb_000627_050 Hb_030827_010--Hb_000627_050 Hb_016924_010 Hb_016924_010 Hb_030827_010--Hb_016924_010 Hb_000703_120 Hb_000703_120 Hb_030827_010--Hb_000703_120 Hb_004116_050 Hb_004116_050 Hb_000416_090--Hb_004116_050 Hb_000416_090--Hb_001405_040 Hb_000416_090--Hb_029639_030 Hb_000416_090--Hb_000181_220 Hb_019570_010 Hb_019570_010 Hb_000416_090--Hb_019570_010 Hb_000318_010 Hb_000318_010 Hb_000416_090--Hb_000318_010 Hb_004032_110 Hb_004032_110 Hb_002949_020--Hb_004032_110 Hb_002235_110 Hb_002235_110 Hb_002949_020--Hb_002235_110 Hb_000054_030 Hb_000054_030 Hb_002949_020--Hb_000054_030 Hb_006370_050 Hb_006370_050 Hb_002949_020--Hb_006370_050 Hb_074197_030 Hb_074197_030 Hb_002949_020--Hb_074197_030 Hb_002635_010 Hb_002635_010 Hb_000130_480--Hb_002635_010 Hb_006198_040 Hb_006198_040 Hb_000130_480--Hb_006198_040 Hb_004607_160 Hb_004607_160 Hb_000130_480--Hb_004607_160 Hb_124579_020 Hb_124579_020 Hb_000130_480--Hb_124579_020 Hb_003142_080 Hb_003142_080 Hb_000130_480--Hb_003142_080 Hb_000836_030 Hb_000836_030 Hb_000130_480--Hb_000836_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133655 1.96045 8.6047 9.43097 0.00737878 0.0922387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0894687 0.337927 0.429373 6.12304 14.452

CAGE analysis