Hb_002235_110

Information

Type -
Description -
Location Contig2235: 64791-69928
Sequence    

Annotation

kegg
ID rcu:RCOM_0538570
description ATP binding protein, putative (EC:2.7.11.23)
nr
ID XP_012084756.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID A0A067JWK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19887 PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23204: 65015-65173 , PASA_asmbl_23205: 66584-67189 , PASA_asmbl_23206: 69168-69367 , PASA_asmbl_23207: 69373-70322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_110 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
2 Hb_000612_090 0.0971397583 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
3 Hb_002949_020 0.1046832721 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
4 Hb_074197_030 0.106099381 - - unnamed protein product [Vitis vinifera]
5 Hb_000054_030 0.108107783 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
6 Hb_005276_070 0.1158035113 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
7 Hb_000805_010 0.1199306637 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
8 Hb_015141_010 0.1218444816 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
9 Hb_005977_060 0.1258929258 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002662_110 0.1305715898 - - Kinesin heavy chain, putative [Ricinus communis]
11 Hb_001124_230 0.1312824043 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
12 Hb_006370_050 0.1314540681 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
13 Hb_005493_010 0.1318595591 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
14 Hb_003849_070 0.1321357614 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
15 Hb_000441_050 0.1322134015 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
16 Hb_002817_040 0.1371744988 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
17 Hb_000616_030 0.1430302258 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
18 Hb_031330_020 0.1447058442 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
19 Hb_000139_270 0.1448159097 - - hypothetical protein POPTR_0008s14890g [Populus trichocarpa]
20 Hb_000300_680 0.1458195976 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_110 Hb_002235_110 Hb_000612_090 Hb_000612_090 Hb_002235_110--Hb_000612_090 Hb_002949_020 Hb_002949_020 Hb_002235_110--Hb_002949_020 Hb_074197_030 Hb_074197_030 Hb_002235_110--Hb_074197_030 Hb_000054_030 Hb_000054_030 Hb_002235_110--Hb_000054_030 Hb_005276_070 Hb_005276_070 Hb_002235_110--Hb_005276_070 Hb_000805_010 Hb_000805_010 Hb_002235_110--Hb_000805_010 Hb_002662_110 Hb_002662_110 Hb_000612_090--Hb_002662_110 Hb_000612_090--Hb_074197_030 Hb_000441_050 Hb_000441_050 Hb_000612_090--Hb_000441_050 Hb_002817_040 Hb_002817_040 Hb_000612_090--Hb_002817_040 Hb_005977_060 Hb_005977_060 Hb_000612_090--Hb_005977_060 Hb_004032_110 Hb_004032_110 Hb_002949_020--Hb_004032_110 Hb_001278_090 Hb_001278_090 Hb_002949_020--Hb_001278_090 Hb_002949_020--Hb_000054_030 Hb_006370_050 Hb_006370_050 Hb_002949_020--Hb_006370_050 Hb_002949_020--Hb_074197_030 Hb_000352_280 Hb_000352_280 Hb_074197_030--Hb_000352_280 Hb_015141_010 Hb_015141_010 Hb_074197_030--Hb_015141_010 Hb_172426_060 Hb_172426_060 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090 Hb_002397_050 Hb_002397_050 Hb_000054_030--Hb_002397_050 Hb_003226_200 Hb_003226_200 Hb_000054_030--Hb_003226_200 Hb_033152_110 Hb_033152_110 Hb_000054_030--Hb_033152_110 Hb_000054_030--Hb_074197_030 Hb_005276_070--Hb_005977_060 Hb_005276_070--Hb_002662_110 Hb_005276_070--Hb_000441_050 Hb_001365_020 Hb_001365_020 Hb_005276_070--Hb_001365_020 Hb_003053_070 Hb_003053_070 Hb_005276_070--Hb_003053_070 Hb_010632_020 Hb_010632_020 Hb_005276_070--Hb_010632_020 Hb_003935_070 Hb_003935_070 Hb_000805_010--Hb_003935_070 Hb_000805_010--Hb_015141_010 Hb_002759_220 Hb_002759_220 Hb_000805_010--Hb_002759_220 Hb_000805_010--Hb_002817_040 Hb_000395_010 Hb_000395_010 Hb_000805_010--Hb_000395_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.216229 0.364974 2.00351 2.59352 0.0805906 0.0417497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104603 0.279843 0.2189 0.896658 4.28734

CAGE analysis