Hb_000352_280

Information

Type -
Description -
Location Contig352: 229103-236183
Sequence    

Annotation

kegg
ID rcu:RCOM_1443610
description acetyl-CoA synthetase, putative (EC:6.2.1.1)
nr
ID XP_012067419.1
description PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
swissprot
ID B9DGD6
description Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1
trembl
ID B9RGS6
description Acetyl-CoA synthetase, putative OS=Ricinus communis GN=RCOM_1443610 PE=3 SV=1
Gene Ontology
ID GO:0005829
description acetyl-coenzyme a chloroplastic glyoxysomal isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36590: 228990-229143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_280 0.0 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
2 Hb_172426_060 0.0561805365 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
3 Hb_000019_080 0.0795149664 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
4 Hb_074197_030 0.0898180173 - - unnamed protein product [Vitis vinifera]
5 Hb_009393_130 0.0991540476 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
6 Hb_015141_010 0.0994785618 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
7 Hb_010557_010 0.099714074 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
8 Hb_000684_200 0.101056246 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_002811_250 0.1019071327 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
10 Hb_000749_260 0.1089793485 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
11 Hb_000612_090 0.1128262875 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
12 Hb_000711_030 0.1171240352 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
13 Hb_032631_030 0.1183549952 - - phosphatidic acid phosphatase, putative [Ricinus communis]
14 Hb_000032_610 0.1188145573 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
15 Hb_022137_050 0.1192648678 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
16 Hb_004096_210 0.1192883564 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
17 Hb_000803_170 0.1197161628 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
18 Hb_000679_080 0.1208888239 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
19 Hb_000866_020 0.1210065574 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
20 Hb_058620_080 0.1213647537 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000352_280 Hb_000352_280 Hb_172426_060 Hb_172426_060 Hb_000352_280--Hb_172426_060 Hb_000019_080 Hb_000019_080 Hb_000352_280--Hb_000019_080 Hb_074197_030 Hb_074197_030 Hb_000352_280--Hb_074197_030 Hb_009393_130 Hb_009393_130 Hb_000352_280--Hb_009393_130 Hb_015141_010 Hb_015141_010 Hb_000352_280--Hb_015141_010 Hb_010557_010 Hb_010557_010 Hb_000352_280--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_172426_060--Hb_002811_250 Hb_172426_060--Hb_000019_080 Hb_032631_030 Hb_032631_030 Hb_172426_060--Hb_032631_030 Hb_000679_080 Hb_000679_080 Hb_172426_060--Hb_000679_080 Hb_172426_060--Hb_015141_010 Hb_004837_100 Hb_004837_100 Hb_000019_080--Hb_004837_100 Hb_000803_170 Hb_000803_170 Hb_000019_080--Hb_000803_170 Hb_001579_280 Hb_001579_280 Hb_000019_080--Hb_001579_280 Hb_000019_080--Hb_010557_010 Hb_000612_090 Hb_000612_090 Hb_074197_030--Hb_000612_090 Hb_074197_030--Hb_015141_010 Hb_002235_110 Hb_002235_110 Hb_074197_030--Hb_002235_110 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090 Hb_003680_060 Hb_003680_060 Hb_009393_130--Hb_003680_060 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_009393_130--Hb_010557_010 Hb_009393_130--Hb_002811_250 Hb_022137_050 Hb_022137_050 Hb_015141_010--Hb_022137_050 Hb_000805_010 Hb_000805_010 Hb_015141_010--Hb_000805_010 Hb_003935_070 Hb_003935_070 Hb_015141_010--Hb_003935_070 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_010557_010--Hb_002811_250 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_010557_010--Hb_000803_170 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.236104 0.592726 9.10049 4.91032 0.30596 0.447426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.577276 0.57704 0.562989 1.70018 11.197

CAGE analysis