Hb_008725_090

Information

Type -
Description -
Location Contig8725: 67177-67602
Sequence    

Annotation

kegg
ID rcu:RCOM_1348340
description hypothetical protein
nr
ID XP_012082843.1
description PREDICTED: uncharacterized protein LOC105642581 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13986 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61182: 66966-67714
cDNA
(Sanger)
(ID:Location)		 010_C21.ab1: 67050-67689 , 027_M16.ab1: 67003-67688 , 028_L07.ab1: 67111-67714

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_090 0.0 - - PREDICTED: uncharacterized protein LOC105642581 [Jatropha curcas]
2 Hb_074197_030 0.1108360356 - - unnamed protein product [Vitis vinifera]
3 Hb_015141_010 0.1218924019 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
4 Hb_041692_010 0.1227267464 - - annexin [Manihot esculenta]
5 Hb_000392_260 0.1380114288 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
6 Hb_000352_280 0.1407717015 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
7 Hb_000032_610 0.1408609741 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
8 Hb_006816_250 0.1425971939 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
9 Hb_000711_030 0.1445468548 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
10 Hb_091433_050 0.1460263038 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
11 Hb_000749_260 0.1466080829 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
12 Hb_001180_010 0.1476545446 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
13 Hb_048476_140 0.1491164003 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
14 Hb_004096_210 0.1495576129 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
15 Hb_022693_010 0.1498938541 - - pectin acetylesterase, putative [Ricinus communis]
16 Hb_004724_170 0.1505259117 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
17 Hb_000948_120 0.1510467918 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
18 Hb_000076_030 0.1511977689 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
19 Hb_003702_060 0.1512591234 - - PREDICTED: protein trichome birefringence-like 38 [Jatropha curcas]
20 Hb_002235_110 0.1527071209 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]

Gene co-expression network

sample Hb_008725_090 Hb_008725_090 Hb_074197_030 Hb_074197_030 Hb_008725_090--Hb_074197_030 Hb_015141_010 Hb_015141_010 Hb_008725_090--Hb_015141_010 Hb_041692_010 Hb_041692_010 Hb_008725_090--Hb_041692_010 Hb_000392_260 Hb_000392_260 Hb_008725_090--Hb_000392_260 Hb_000352_280 Hb_000352_280 Hb_008725_090--Hb_000352_280 Hb_000032_610 Hb_000032_610 Hb_008725_090--Hb_000032_610 Hb_074197_030--Hb_000352_280 Hb_000612_090 Hb_000612_090 Hb_074197_030--Hb_000612_090 Hb_074197_030--Hb_015141_010 Hb_002235_110 Hb_002235_110 Hb_074197_030--Hb_002235_110 Hb_172426_060 Hb_172426_060 Hb_074197_030--Hb_172426_060 Hb_022137_050 Hb_022137_050 Hb_015141_010--Hb_022137_050 Hb_015141_010--Hb_000352_280 Hb_015141_010--Hb_172426_060 Hb_000805_010 Hb_000805_010 Hb_015141_010--Hb_000805_010 Hb_003935_070 Hb_003935_070 Hb_015141_010--Hb_003935_070 Hb_000748_120 Hb_000748_120 Hb_041692_010--Hb_000748_120 Hb_051663_010 Hb_051663_010 Hb_041692_010--Hb_051663_010 Hb_001516_010 Hb_001516_010 Hb_041692_010--Hb_001516_010 Hb_000347_100 Hb_000347_100 Hb_041692_010--Hb_000347_100 Hb_001541_130 Hb_001541_130 Hb_041692_010--Hb_001541_130 Hb_001159_070 Hb_001159_070 Hb_000392_260--Hb_001159_070 Hb_000283_030 Hb_000283_030 Hb_000392_260--Hb_000283_030 Hb_000300_110 Hb_000300_110 Hb_000392_260--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_000392_260--Hb_000424_130 Hb_005535_070 Hb_005535_070 Hb_000392_260--Hb_005535_070 Hb_000711_030 Hb_000711_030 Hb_000392_260--Hb_000711_030 Hb_000352_280--Hb_172426_060 Hb_000019_080 Hb_000019_080 Hb_000352_280--Hb_000019_080 Hb_009393_130 Hb_009393_130 Hb_000352_280--Hb_009393_130 Hb_010557_010 Hb_010557_010 Hb_000352_280--Hb_010557_010 Hb_000465_410 Hb_000465_410 Hb_000032_610--Hb_000465_410 Hb_005237_020 Hb_005237_020 Hb_000032_610--Hb_005237_020 Hb_002701_070 Hb_002701_070 Hb_000032_610--Hb_002701_070 Hb_001180_010 Hb_001180_010 Hb_000032_610--Hb_001180_010 Hb_019613_030 Hb_019613_030 Hb_000032_610--Hb_019613_030 Hb_048476_140 Hb_048476_140 Hb_000032_610--Hb_048476_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.494321 6.15157 65.2898 55.2424 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13577 3.75569 5.21608 14.6793 81.0703

CAGE analysis