Hb_001180_010

Information

Type -
Description -
Location Contig1180: 4778-9712
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08030g
description POPTRDRAFT_878921; hypothetical protein
nr
ID XP_012079011.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
swissprot
ID Q9FGH4
description Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1
trembl
ID A0A067LBM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17389 PE=3 SV=1
Gene Ontology
ID GO:0046658
description glucan endo- -beta-glucosidase 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05423: 4781-8869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001180_010 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
2 Hb_001544_050 0.0675506102 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
3 Hb_000076_030 0.07937857 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
4 Hb_004994_330 0.0809457559 - - DNA binding protein, putative [Ricinus communis]
5 Hb_048476_140 0.0817880409 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
6 Hb_000465_410 0.0858226522 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002701_070 0.0861418532 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
8 Hb_002662_110 0.1041143735 - - Kinesin heavy chain, putative [Ricinus communis]
9 Hb_001433_150 0.106198728 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004041_050 0.1072197733 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
11 Hb_000390_210 0.1097106405 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
12 Hb_000032_610 0.112893594 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
13 Hb_001017_130 0.1164108325 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
14 Hb_000749_260 0.1173886351 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
15 Hb_143004_020 0.1201036402 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
16 Hb_010381_040 0.1223533396 - - beta-galactosidase, putative [Ricinus communis]
17 Hb_000207_350 0.1225618248 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
18 Hb_147378_010 0.1228234325 - - -
19 Hb_000689_050 0.1230386466 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000749_020 0.1249559218 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001180_010 Hb_001180_010 Hb_001544_050 Hb_001544_050 Hb_001180_010--Hb_001544_050 Hb_000076_030 Hb_000076_030 Hb_001180_010--Hb_000076_030 Hb_004994_330 Hb_004994_330 Hb_001180_010--Hb_004994_330 Hb_048476_140 Hb_048476_140 Hb_001180_010--Hb_048476_140 Hb_000465_410 Hb_000465_410 Hb_001180_010--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001180_010--Hb_002701_070 Hb_000390_210 Hb_000390_210 Hb_001544_050--Hb_000390_210 Hb_001544_050--Hb_000465_410 Hb_001544_050--Hb_002701_070 Hb_000749_260 Hb_000749_260 Hb_001544_050--Hb_000749_260 Hb_001544_050--Hb_004994_330 Hb_000076_030--Hb_048476_140 Hb_161396_010 Hb_161396_010 Hb_000076_030--Hb_161396_010 Hb_022693_110 Hb_022693_110 Hb_000076_030--Hb_022693_110 Hb_011174_040 Hb_011174_040 Hb_000076_030--Hb_011174_040 Hb_042083_030 Hb_042083_030 Hb_000076_030--Hb_042083_030 Hb_002662_110 Hb_002662_110 Hb_004994_330--Hb_002662_110 Hb_004994_330--Hb_000465_410 Hb_000417_050 Hb_000417_050 Hb_004994_330--Hb_000417_050 Hb_000207_350 Hb_000207_350 Hb_004994_330--Hb_000207_350 Hb_004041_050 Hb_004041_050 Hb_048476_140--Hb_004041_050 Hb_048476_140--Hb_022693_110 Hb_048476_140--Hb_042083_030 Hb_048476_140--Hb_161396_010 Hb_000465_410--Hb_002701_070 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_000465_410--Hb_000749_260 Hb_000958_120 Hb_000958_120 Hb_002701_070--Hb_000958_120 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_010868_040 Hb_010868_040 Hb_002701_070--Hb_010868_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.267092 0.472234 3.85814 3.52898 0.0929351 0.128955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.221665 0.298953 0.421057 0.745937 3.38599

CAGE analysis