Hb_000465_410

Information

Type -
Description -
Location Contig465: 386692-389478
Sequence    

Annotation

kegg
ID rcu:RCOM_0191370
description hypothetical protein
nr
ID XP_002532354.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T285
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0191370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44005: 387039-387927 , PASA_asmbl_44006: 388237-389508 , PASA_asmbl_44007: 388241-389228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_410 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002701_070 0.070043217 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
3 Hb_001544_050 0.0747582422 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
4 Hb_001180_010 0.0858226522 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
5 Hb_000032_610 0.0947312012 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
6 Hb_004994_330 0.0978707284 - - DNA binding protein, putative [Ricinus communis]
7 Hb_000749_260 0.0995017486 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
8 Hb_005237_020 0.1030873388 - - Kinesin heavy chain, putative [Ricinus communis]
9 Hb_143004_020 0.1038627999 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
10 Hb_008053_030 0.1062700046 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
11 Hb_010381_040 0.1132506548 - - beta-galactosidase, putative [Ricinus communis]
12 Hb_147378_010 0.1157987891 - - -
13 Hb_000390_210 0.1174076096 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_000207_350 0.1186367693 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
15 Hb_006133_020 0.1248655288 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
16 Hb_048476_140 0.1268398692 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
17 Hb_001123_310 0.1308760466 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
18 Hb_000076_030 0.1323027884 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
19 Hb_011174_040 0.1323408946 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006816_250 0.1347970465 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_410 Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_000465_410--Hb_002701_070 Hb_001544_050 Hb_001544_050 Hb_000465_410--Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_000465_410--Hb_001180_010 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_004994_330 Hb_004994_330 Hb_000465_410--Hb_004994_330 Hb_000749_260 Hb_000749_260 Hb_000465_410--Hb_000749_260 Hb_002701_070--Hb_001544_050 Hb_002701_070--Hb_001180_010 Hb_000958_120 Hb_000958_120 Hb_002701_070--Hb_000958_120 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_010868_040 Hb_010868_040 Hb_002701_070--Hb_010868_040 Hb_001544_050--Hb_001180_010 Hb_000390_210 Hb_000390_210 Hb_001544_050--Hb_000390_210 Hb_001544_050--Hb_000749_260 Hb_001544_050--Hb_004994_330 Hb_000076_030 Hb_000076_030 Hb_001180_010--Hb_000076_030 Hb_001180_010--Hb_004994_330 Hb_048476_140 Hb_048476_140 Hb_001180_010--Hb_048476_140 Hb_005237_020 Hb_005237_020 Hb_000032_610--Hb_005237_020 Hb_000032_610--Hb_002701_070 Hb_000032_610--Hb_001180_010 Hb_019613_030 Hb_019613_030 Hb_000032_610--Hb_019613_030 Hb_000032_610--Hb_048476_140 Hb_002662_110 Hb_002662_110 Hb_004994_330--Hb_002662_110 Hb_000417_050 Hb_000417_050 Hb_004994_330--Hb_000417_050 Hb_000207_350 Hb_000207_350 Hb_004994_330--Hb_000207_350 Hb_000749_260--Hb_000390_210 Hb_147378_010 Hb_147378_010 Hb_000749_260--Hb_147378_010 Hb_000749_260--Hb_002701_070 Hb_000352_280 Hb_000352_280 Hb_000749_260--Hb_000352_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113508 0.215893 3.2556 2.1119 0.0927848 0.103333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108945 0.19286 0.202163 0.427026 1.93671

CAGE analysis