Hb_002701_070

Information

Type -
Description -
Location Contig2701: 64201-72938
Sequence    

Annotation

kegg
ID rcu:RCOM_0790280
description hypothetical protein
nr
ID XP_012088076.1
description PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25600 PE=4 SV=1
Gene Ontology
ID GO:0005876
description PREDICTED: uncharacterized protein LOC105646760

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28314: 67203-67367 , PASA_asmbl_28315: 69882-71119 , PASA_asmbl_28316: 72320-72605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_070 0.0 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
2 Hb_000465_410 0.070043217 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001544_050 0.0786679869 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
4 Hb_001180_010 0.0861418532 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
5 Hb_000958_120 0.1024900976 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
6 Hb_000996_080 0.1031306777 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
7 Hb_010868_040 0.1043918826 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
8 Hb_000749_260 0.1056399418 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
9 Hb_000032_610 0.1088481448 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
10 Hb_000207_350 0.1106808668 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
11 Hb_000390_210 0.1108666934 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
12 Hb_010381_040 0.1116749971 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_004994_330 0.1136771366 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000227_400 0.115590215 - - lipoxygenase, putative [Ricinus communis]
15 Hb_000940_030 0.1169253613 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
16 Hb_002641_120 0.1178875399 - - PREDICTED: calmodulin [Jatropha curcas]
17 Hb_005237_020 0.121016122 - - Kinesin heavy chain, putative [Ricinus communis]
18 Hb_006153_150 0.1257283059 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
19 Hb_001922_110 0.1277267207 - - conserved hypothetical protein [Ricinus communis]
20 Hb_143004_020 0.1286240992 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002701_070 Hb_002701_070 Hb_000465_410 Hb_000465_410 Hb_002701_070--Hb_000465_410 Hb_001544_050 Hb_001544_050 Hb_002701_070--Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_002701_070--Hb_001180_010 Hb_000958_120 Hb_000958_120 Hb_002701_070--Hb_000958_120 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_010868_040 Hb_010868_040 Hb_002701_070--Hb_010868_040 Hb_000465_410--Hb_001544_050 Hb_000465_410--Hb_001180_010 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_004994_330 Hb_004994_330 Hb_000465_410--Hb_004994_330 Hb_000749_260 Hb_000749_260 Hb_000465_410--Hb_000749_260 Hb_001544_050--Hb_001180_010 Hb_000390_210 Hb_000390_210 Hb_001544_050--Hb_000390_210 Hb_001544_050--Hb_000749_260 Hb_001544_050--Hb_004994_330 Hb_000076_030 Hb_000076_030 Hb_001180_010--Hb_000076_030 Hb_001180_010--Hb_004994_330 Hb_048476_140 Hb_048476_140 Hb_001180_010--Hb_048476_140 Hb_001922_110 Hb_001922_110 Hb_000958_120--Hb_001922_110 Hb_000227_400 Hb_000227_400 Hb_000958_120--Hb_000227_400 Hb_000322_030 Hb_000322_030 Hb_000958_120--Hb_000322_030 Hb_000958_120--Hb_000390_210 Hb_000958_120--Hb_001544_050 Hb_003020_250 Hb_003020_250 Hb_000996_080--Hb_003020_250 Hb_000940_030 Hb_000940_030 Hb_000996_080--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000996_080--Hb_000327_200 Hb_000310_060 Hb_000310_060 Hb_000996_080--Hb_000310_060 Hb_000689_050 Hb_000689_050 Hb_000996_080--Hb_000689_050 Hb_001587_040 Hb_001587_040 Hb_000996_080--Hb_001587_040 Hb_004855_020 Hb_004855_020 Hb_010868_040--Hb_004855_020 Hb_010868_040--Hb_000227_400 Hb_010868_040--Hb_000940_030 Hb_000207_350 Hb_000207_350 Hb_010868_040--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_010868_040--Hb_010381_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.653556 1.28117 11.446 6.29003 0.2836 0.244837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.633851 0.754262 0.860162 1.76665 7.12992

CAGE analysis