Hb_000958_120

Information

Type -
Description -
Location Contig958: 97533-100070
Sequence    

Annotation

kegg
ID rcu:RCOM_0968070
description hypothetical protein
nr
ID XP_012087622.1
description PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25397 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein atab2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63593: 97568-99913
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_120 0.0 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
2 Hb_001922_110 0.0959895475 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002701_070 0.1024900976 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
4 Hb_000227_400 0.1026746278 - - lipoxygenase, putative [Ricinus communis]
5 Hb_000322_030 0.1095827506 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
6 Hb_000390_210 0.1099579131 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_001544_050 0.114392763 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
8 Hb_006133_020 0.1194793767 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
9 Hb_001141_050 0.1204868631 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
10 Hb_000996_080 0.1228317712 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
11 Hb_003640_050 0.1251439889 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_002045_090 0.1262276642 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
13 Hb_000230_190 0.1268885714 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
14 Hb_000076_250 0.1293453018 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010868_040 0.1298954427 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
16 Hb_000388_080 0.1305317507 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
17 Hb_008511_040 0.1325181531 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_000940_030 0.1334820203 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
19 Hb_001017_130 0.1343615205 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
20 Hb_001433_150 0.1348903688 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000958_120 Hb_000958_120 Hb_001922_110 Hb_001922_110 Hb_000958_120--Hb_001922_110 Hb_002701_070 Hb_002701_070 Hb_000958_120--Hb_002701_070 Hb_000227_400 Hb_000227_400 Hb_000958_120--Hb_000227_400 Hb_000322_030 Hb_000322_030 Hb_000958_120--Hb_000322_030 Hb_000390_210 Hb_000390_210 Hb_000958_120--Hb_000390_210 Hb_001544_050 Hb_001544_050 Hb_000958_120--Hb_001544_050 Hb_001922_110--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_001922_110--Hb_001141_050 Hb_000792_050 Hb_000792_050 Hb_001922_110--Hb_000792_050 Hb_010868_040 Hb_010868_040 Hb_001922_110--Hb_010868_040 Hb_008511_040 Hb_008511_040 Hb_001922_110--Hb_008511_040 Hb_000465_410 Hb_000465_410 Hb_002701_070--Hb_000465_410 Hb_002701_070--Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_002701_070--Hb_001180_010 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_002701_070--Hb_010868_040 Hb_000227_400--Hb_010868_040 Hb_004855_020 Hb_004855_020 Hb_000227_400--Hb_004855_020 Hb_000207_350 Hb_000207_350 Hb_000227_400--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_000227_400--Hb_000243_060 Hb_000181_330 Hb_000181_330 Hb_000322_030--Hb_000181_330 Hb_000099_170 Hb_000099_170 Hb_000322_030--Hb_000099_170 Hb_000322_030--Hb_000390_210 Hb_000388_080 Hb_000388_080 Hb_000322_030--Hb_000388_080 Hb_000322_030--Hb_000227_400 Hb_000390_210--Hb_001544_050 Hb_000749_260 Hb_000749_260 Hb_000390_210--Hb_000749_260 Hb_147378_010 Hb_147378_010 Hb_000390_210--Hb_147378_010 Hb_143004_020 Hb_143004_020 Hb_000390_210--Hb_143004_020 Hb_000061_250 Hb_000061_250 Hb_000390_210--Hb_000061_250 Hb_001544_050--Hb_001180_010 Hb_001544_050--Hb_000465_410 Hb_001544_050--Hb_000749_260 Hb_004994_330 Hb_004994_330 Hb_001544_050--Hb_004994_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42827 15.0073 82.8816 40.7221 2.5888 2.36945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.79865 3.09773 4.64232 5.54347 47.8129

CAGE analysis