Hb_143004_020

Information

Type -
Description -
Location Contig143004: 6420-10278
Sequence    

Annotation

kegg
ID rcu:RCOM_1033250
description cornichon, putative (EC:6.3.2.5)
nr
ID XP_012078128.1
description PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
swissprot
ID Q8GXR5
description Phosphopantothenate--cysteine ligase 1 OS=Arabidopsis thaliana GN=PPCS1 PE=2 SV=1
trembl
ID A0A067KCM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12020 PE=4 SV=1
Gene Ontology
ID GO:0004632
description phosphopantothenate--cysteine ligase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11370: 6424-10402 , PASA_asmbl_11371: 7195-10394 , PASA_asmbl_11373: 8119-9063
cDNA
(Sanger)
(ID:Location)		 023_F24.ab1: 7598-10402

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143004_020 0.0 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
2 Hb_000390_210 0.0953586048 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_001544_050 0.1034590996 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
4 Hb_000465_410 0.1038627999 - - conserved hypothetical protein [Ricinus communis]
5 Hb_089966_010 0.1127124121 - - -
6 Hb_000749_260 0.1172439598 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
7 Hb_147378_010 0.1183625865 - - -
8 Hb_001180_010 0.1201036402 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
9 Hb_002272_220 0.1213771449 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004994_330 0.1267847894 - - DNA binding protein, putative [Ricinus communis]
11 Hb_002701_070 0.1286240992 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
12 Hb_000061_250 0.1325797933 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
13 Hb_000749_020 0.1378753954 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
14 Hb_000108_150 0.1422354123 - - alpha/beta hydrolase, putative [Ricinus communis]
15 Hb_007904_060 0.1442976235 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
16 Hb_010381_040 0.1450763114 - - beta-galactosidase, putative [Ricinus communis]
17 Hb_000152_490 0.1456490026 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
18 Hb_006153_150 0.1462343156 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
19 Hb_005237_020 0.1476101054 - - Kinesin heavy chain, putative [Ricinus communis]
20 Hb_000032_610 0.1479838391 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_143004_020 Hb_143004_020 Hb_000390_210 Hb_000390_210 Hb_143004_020--Hb_000390_210 Hb_001544_050 Hb_001544_050 Hb_143004_020--Hb_001544_050 Hb_000465_410 Hb_000465_410 Hb_143004_020--Hb_000465_410 Hb_089966_010 Hb_089966_010 Hb_143004_020--Hb_089966_010 Hb_000749_260 Hb_000749_260 Hb_143004_020--Hb_000749_260 Hb_147378_010 Hb_147378_010 Hb_143004_020--Hb_147378_010 Hb_000390_210--Hb_001544_050 Hb_000390_210--Hb_000749_260 Hb_000390_210--Hb_147378_010 Hb_000061_250 Hb_000061_250 Hb_000390_210--Hb_000061_250 Hb_000322_030 Hb_000322_030 Hb_000390_210--Hb_000322_030 Hb_001180_010 Hb_001180_010 Hb_001544_050--Hb_001180_010 Hb_001544_050--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001544_050--Hb_002701_070 Hb_001544_050--Hb_000749_260 Hb_004994_330 Hb_004994_330 Hb_001544_050--Hb_004994_330 Hb_000465_410--Hb_002701_070 Hb_000465_410--Hb_001180_010 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_000465_410--Hb_004994_330 Hb_000465_410--Hb_000749_260 Hb_089966_010--Hb_000749_260 Hb_089966_010--Hb_001544_050 Hb_089966_010--Hb_000390_210 Hb_002272_220 Hb_002272_220 Hb_089966_010--Hb_002272_220 Hb_089966_010--Hb_000465_410 Hb_000749_260--Hb_147378_010 Hb_000749_260--Hb_002701_070 Hb_000352_280 Hb_000352_280 Hb_000749_260--Hb_000352_280 Hb_147378_010--Hb_001544_050 Hb_004650_050 Hb_004650_050 Hb_147378_010--Hb_004650_050 Hb_008053_030 Hb_008053_030 Hb_147378_010--Hb_008053_030 Hb_147378_010--Hb_000465_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.41742 7.83792 155.998 119.064 7.4032 10.717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1452 17.8371 9.24428 13.1291 119.881

CAGE analysis