Hb_089966_010

Information

Type -
Description -
Location Contig89966: 84-560
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089966_010 0.0 - - -
2 Hb_143004_020 0.1127124121 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
3 Hb_000749_260 0.1210433097 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
4 Hb_001544_050 0.1320989426 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
5 Hb_000390_210 0.1349743402 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_002272_220 0.1355047209 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000465_410 0.1365944094 - - conserved hypothetical protein [Ricinus communis]
8 Hb_147378_010 0.1421718045 - - -
9 Hb_000206_170 0.1458857092 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
10 Hb_002701_070 0.1478539492 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
11 Hb_005237_020 0.1530633875 - - Kinesin heavy chain, putative [Ricinus communis]
12 Hb_006153_150 0.1596532117 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
13 Hb_012545_040 0.1605932962 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000061_250 0.1609419925 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
15 Hb_000958_120 0.1625647352 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
16 Hb_001623_380 0.1641900595 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
17 Hb_005694_050 0.1658252793 - - NC domain-containing family protein [Populus trichocarpa]
18 Hb_000000_180 0.1664266738 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
19 Hb_019613_030 0.1668343321 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
20 Hb_002411_100 0.1675453866 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]

Gene co-expression network

sample Hb_089966_010 Hb_089966_010 Hb_143004_020 Hb_143004_020 Hb_089966_010--Hb_143004_020 Hb_000749_260 Hb_000749_260 Hb_089966_010--Hb_000749_260 Hb_001544_050 Hb_001544_050 Hb_089966_010--Hb_001544_050 Hb_000390_210 Hb_000390_210 Hb_089966_010--Hb_000390_210 Hb_002272_220 Hb_002272_220 Hb_089966_010--Hb_002272_220 Hb_000465_410 Hb_000465_410 Hb_089966_010--Hb_000465_410 Hb_143004_020--Hb_000390_210 Hb_143004_020--Hb_001544_050 Hb_143004_020--Hb_000465_410 Hb_143004_020--Hb_000749_260 Hb_147378_010 Hb_147378_010 Hb_143004_020--Hb_147378_010 Hb_000749_260--Hb_000390_210 Hb_000749_260--Hb_001544_050 Hb_000749_260--Hb_147378_010 Hb_000749_260--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_000749_260--Hb_002701_070 Hb_000352_280 Hb_000352_280 Hb_000749_260--Hb_000352_280 Hb_001180_010 Hb_001180_010 Hb_001544_050--Hb_001180_010 Hb_001544_050--Hb_000390_210 Hb_001544_050--Hb_000465_410 Hb_001544_050--Hb_002701_070 Hb_004994_330 Hb_004994_330 Hb_001544_050--Hb_004994_330 Hb_000390_210--Hb_147378_010 Hb_000061_250 Hb_000061_250 Hb_000390_210--Hb_000061_250 Hb_000322_030 Hb_000322_030 Hb_000390_210--Hb_000322_030 Hb_002411_100 Hb_002411_100 Hb_002272_220--Hb_002411_100 Hb_002272_220--Hb_000390_210 Hb_010557_010 Hb_010557_010 Hb_002272_220--Hb_010557_010 Hb_001623_380 Hb_001623_380 Hb_002272_220--Hb_001623_380 Hb_009393_130 Hb_009393_130 Hb_002272_220--Hb_009393_130 Hb_000684_200 Hb_000684_200 Hb_002272_220--Hb_000684_200 Hb_000465_410--Hb_002701_070 Hb_000465_410--Hb_001180_010 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_000465_410--Hb_004994_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92685 7.63521 182.223 98.7255 11.9703 1.17055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4208 18.4021 4.77907 10.6533 114.624

CAGE analysis