Hb_010557_010

Information

Type -
Description -
Location Contig10557: 11386-13835
Sequence    

Annotation

kegg
ID rcu:RCOM_1515340
description 50S ribosomal protein L3, putative
nr
ID XP_012070326.1
description PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
swissprot
ID O80360
description 50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 PE=2 SV=1
trembl
ID A0A067KTX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02632 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01845: 11408-13882 , PASA_asmbl_01846: 12960-13145 , PASA_asmbl_01847: 14772-21633
cDNA
(Sanger)
(ID:Location)		 009_N14.ab1: 11439-13310 , 027_K21.ab1: 11765-13882 , 044_D12.ab1: 11712-13882 , 051_G19.ab1: 11776-13882

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010557_010 0.0 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
2 Hb_002411_100 0.0682247229 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
3 Hb_002811_250 0.070915222 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
4 Hb_000703_070 0.076656051 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
5 Hb_000803_170 0.078758929 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
6 Hb_009393_130 0.085319044 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
7 Hb_000045_050 0.0898392088 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
8 Hb_003948_020 0.0904253782 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
9 Hb_000684_200 0.0917270618 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_058620_080 0.0944714757 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
11 Hb_000442_070 0.0985640705 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
12 Hb_000352_280 0.099714074 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
13 Hb_001047_180 0.1007487534 - - conserved hypothetical protein [Ricinus communis]
14 Hb_027298_020 0.1009812126 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
15 Hb_000019_080 0.1021409446 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
16 Hb_006583_030 0.1031013653 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
17 Hb_005563_040 0.1032933608 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
18 Hb_142663_020 0.1042700304 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
19 Hb_000089_140 0.1045596019 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
20 Hb_000834_060 0.1049765911 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010557_010 Hb_010557_010 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_002811_250 Hb_002811_250 Hb_010557_010--Hb_002811_250 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_002811_250--Hb_000803_170 Hb_005181_120 Hb_005181_120 Hb_002811_250--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080 Hb_027298_020 Hb_027298_020 Hb_000703_070--Hb_027298_020 Hb_004117_150 Hb_004117_150 Hb_000703_070--Hb_004117_150 Hb_000703_070--Hb_002811_250 Hb_002232_380 Hb_002232_380 Hb_000703_070--Hb_002232_380 Hb_000803_170--Hb_005563_040 Hb_000803_170--Hb_000193_220 Hb_000089_140 Hb_000089_140 Hb_000803_170--Hb_000089_140 Hb_001579_280 Hb_001579_280 Hb_000803_170--Hb_001579_280 Hb_003680_060 Hb_003680_060 Hb_009393_130--Hb_003680_060 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_009393_130--Hb_002811_250 Hb_000061_250 Hb_000061_250 Hb_000045_050--Hb_000061_250 Hb_000108_150 Hb_000108_150 Hb_000045_050--Hb_000108_150 Hb_000544_080 Hb_000544_080 Hb_000045_050--Hb_000544_080 Hb_000045_050--Hb_003948_020 Hb_000045_050--Hb_002811_250 Hb_000045_050--Hb_005181_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37482 18.8311 166.096 58.994 5.84225 9.28263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6786 17.3311 10.8891 16.1877 201.19

CAGE analysis