Hb_000544_080

Information

Type -
Description -
Location Contig544: 114056-118333
Sequence    

Annotation

kegg
ID vvi:100853969
description uncharacterized LOC100853969
nr
ID XP_012068452.1
description PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1Q4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03634 PE=4 SV=1
Gene Ontology
ID GO:0005737
description fkbp-type peptidyl-prolyl cis-trans isomerase 5 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47925: 116891-117071 , PASA_asmbl_47927: 117593-118197 , PASA_asmbl_47928: 117855-118122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_080 0.0 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
2 Hb_011519_050 0.0721285314 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
3 Hb_000045_050 0.077404047 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
4 Hb_058620_080 0.0880792578 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
5 Hb_000061_250 0.0906753356 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
6 Hb_009393_130 0.1011072257 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
7 Hb_005488_190 0.1072633735 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
8 Hb_010557_010 0.1127876831 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
9 Hb_002495_090 0.113398553 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
10 Hb_000703_070 0.1141945423 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
11 Hb_002411_100 0.1155696261 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
12 Hb_010721_020 0.1156259883 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
13 Hb_003948_020 0.1156322273 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
14 Hb_007803_040 0.1180122538 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
15 Hb_001047_180 0.1196160402 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003549_140 0.1203817478 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_137216_010 0.1227696987 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
18 Hb_000118_090 0.1237523378 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
19 Hb_002811_250 0.1240030183 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
20 Hb_000108_150 0.1270658194 - - alpha/beta hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000544_080 Hb_000544_080 Hb_011519_050 Hb_011519_050 Hb_000544_080--Hb_011519_050 Hb_000045_050 Hb_000045_050 Hb_000544_080--Hb_000045_050 Hb_058620_080 Hb_058620_080 Hb_000544_080--Hb_058620_080 Hb_000061_250 Hb_000061_250 Hb_000544_080--Hb_000061_250 Hb_009393_130 Hb_009393_130 Hb_000544_080--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_000544_080--Hb_005488_190 Hb_011519_050--Hb_058620_080 Hb_011519_050--Hb_000061_250 Hb_002411_100 Hb_002411_100 Hb_011519_050--Hb_002411_100 Hb_011519_050--Hb_000045_050 Hb_000703_070 Hb_000703_070 Hb_011519_050--Hb_000703_070 Hb_000045_050--Hb_000061_250 Hb_000108_150 Hb_000108_150 Hb_000045_050--Hb_000108_150 Hb_003948_020 Hb_003948_020 Hb_000045_050--Hb_003948_020 Hb_002811_250 Hb_002811_250 Hb_000045_050--Hb_002811_250 Hb_005181_120 Hb_005181_120 Hb_000045_050--Hb_005181_120 Hb_058620_080--Hb_009393_130 Hb_010557_010 Hb_010557_010 Hb_058620_080--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_058620_080--Hb_000803_170 Hb_007803_040 Hb_007803_040 Hb_058620_080--Hb_007803_040 Hb_000061_250--Hb_000108_150 Hb_000264_280 Hb_000264_280 Hb_000061_250--Hb_000264_280 Hb_000061_250--Hb_003948_020 Hb_000390_210 Hb_000390_210 Hb_000061_250--Hb_000390_210 Hb_003680_060 Hb_003680_060 Hb_009393_130--Hb_003680_060 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_009393_130--Hb_010557_010 Hb_009393_130--Hb_002811_250 Hb_005488_190--Hb_007803_040 Hb_005488_190--Hb_002811_250 Hb_006681_020 Hb_006681_020 Hb_005488_190--Hb_006681_020 Hb_005488_190--Hb_009393_130 Hb_002495_090 Hb_002495_090 Hb_005488_190--Hb_002495_090 Hb_000062_480 Hb_000062_480 Hb_005488_190--Hb_000062_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50303 3.5456 37.9908 17.2992 2.70647 3.04229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.51175 2.03717 1.28014 0.997149 46.3417

CAGE analysis