Hb_011519_050

Information

Type -
Description -
Location Contig11519: 41018-44283
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04810g
description hypothetical protein
nr
ID XP_006374201.1
description hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FLG8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s04810g PE=4 SV=1
Gene Ontology
ID GO:0009535
description hypothetical protein POPTR_0015s04810g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04586: 40999-41223 , PASA_asmbl_04587: 42485-43360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011519_050 0.0 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
2 Hb_000544_080 0.0721285314 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
3 Hb_058620_080 0.0969076038 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
4 Hb_000061_250 0.1099965462 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
5 Hb_002411_100 0.1116549413 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
6 Hb_000045_050 0.1162583147 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
7 Hb_000703_070 0.1173049518 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
8 Hb_004459_060 0.1239918923 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
9 Hb_003948_020 0.126032722 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
10 Hb_009393_130 0.126572963 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
11 Hb_000206_170 0.1284521797 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
12 Hb_010557_010 0.1293886646 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
13 Hb_000393_040 0.1318914707 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
14 Hb_003549_140 0.1319766868 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_002495_090 0.1324500563 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
16 Hb_010721_020 0.1336782248 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
17 Hb_001047_180 0.134084878 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000146_030 0.1354064428 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
19 Hb_005488_190 0.1363921827 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
20 Hb_137216_010 0.1370152758 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]

Gene co-expression network

sample Hb_011519_050 Hb_011519_050 Hb_000544_080 Hb_000544_080 Hb_011519_050--Hb_000544_080 Hb_058620_080 Hb_058620_080 Hb_011519_050--Hb_058620_080 Hb_000061_250 Hb_000061_250 Hb_011519_050--Hb_000061_250 Hb_002411_100 Hb_002411_100 Hb_011519_050--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_011519_050--Hb_000045_050 Hb_000703_070 Hb_000703_070 Hb_011519_050--Hb_000703_070 Hb_000544_080--Hb_000045_050 Hb_000544_080--Hb_058620_080 Hb_000544_080--Hb_000061_250 Hb_009393_130 Hb_009393_130 Hb_000544_080--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_000544_080--Hb_005488_190 Hb_058620_080--Hb_009393_130 Hb_010557_010 Hb_010557_010 Hb_058620_080--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_058620_080--Hb_000803_170 Hb_007803_040 Hb_007803_040 Hb_058620_080--Hb_007803_040 Hb_000108_150 Hb_000108_150 Hb_000061_250--Hb_000108_150 Hb_000061_250--Hb_000045_050 Hb_000264_280 Hb_000264_280 Hb_000061_250--Hb_000264_280 Hb_003948_020 Hb_003948_020 Hb_000061_250--Hb_003948_020 Hb_000390_210 Hb_000390_210 Hb_000061_250--Hb_000390_210 Hb_002411_100--Hb_003948_020 Hb_002411_100--Hb_010557_010 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_000045_050--Hb_000108_150 Hb_000045_050--Hb_003948_020 Hb_002811_250 Hb_002811_250 Hb_000045_050--Hb_002811_250 Hb_005181_120 Hb_005181_120 Hb_000045_050--Hb_005181_120 Hb_027298_020 Hb_027298_020 Hb_000703_070--Hb_027298_020 Hb_000703_070--Hb_010557_010 Hb_004117_150 Hb_004117_150 Hb_000703_070--Hb_004117_150 Hb_000703_070--Hb_002811_250 Hb_002232_380 Hb_002232_380 Hb_000703_070--Hb_002232_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86433 3.78282 61.0614 24.9001 6.48928 2.66433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.87258 5.74357 1.04122 1.72821 72.0402

CAGE analysis