Hb_004117_150

Information

Type -
Description -
Location Contig4117: 101831-104597
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14360g
description POPTRDRAFT_254402; hypothetical protein
nr
ID XP_012091049.1
description PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
swissprot
ID B1XKV1
description Elongation factor P OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=efp PE=3 SV=1
trembl
ID A0A067JQQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00656 PE=3 SV=1
Gene Ontology
ID GO:0009570
description elongation factor p family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40758: 101411-101876 , PASA_asmbl_40759: 101919-104592
cDNA
(Sanger)
(ID:Location)		 043_K05.ab1: 102764-104586

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_150 0.0 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
2 Hb_004208_090 0.0791061956 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
3 Hb_006681_020 0.0820846093 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
4 Hb_001999_260 0.0823180207 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
5 Hb_004007_170 0.0964348427 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_000768_120 0.0970086393 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
7 Hb_000703_070 0.0977726593 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
8 Hb_004855_070 0.1079758946 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
9 Hb_000322_040 0.1124934854 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
10 Hb_000062_480 0.1125068002 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
11 Hb_006252_030 0.1206445705 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
12 Hb_006583_030 0.121666998 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
13 Hb_027298_020 0.1220337871 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
14 Hb_000056_310 0.1236377393 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
15 Hb_001047_180 0.1246992385 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000802_050 0.1268374764 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
17 Hb_005488_190 0.1269748138 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
18 Hb_000169_070 0.1275354109 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
19 Hb_000934_260 0.128451076 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_003470_100 0.129346862 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004117_150 Hb_004117_150 Hb_004208_090 Hb_004208_090 Hb_004117_150--Hb_004208_090 Hb_006681_020 Hb_006681_020 Hb_004117_150--Hb_006681_020 Hb_001999_260 Hb_001999_260 Hb_004117_150--Hb_001999_260 Hb_004007_170 Hb_004007_170 Hb_004117_150--Hb_004007_170 Hb_000768_120 Hb_000768_120 Hb_004117_150--Hb_000768_120 Hb_000703_070 Hb_000703_070 Hb_004117_150--Hb_000703_070 Hb_004208_090--Hb_001999_260 Hb_000934_260 Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004208_090--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004208_090--Hb_004855_070 Hb_004208_090--Hb_000768_120 Hb_006681_020--Hb_000768_120 Hb_006681_020--Hb_001999_260 Hb_006681_020--Hb_004855_070 Hb_006583_030 Hb_006583_030 Hb_006681_020--Hb_006583_030 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_001999_260--Hb_006583_030 Hb_005000_060 Hb_005000_060 Hb_001999_260--Hb_005000_060 Hb_001999_260--Hb_000934_260 Hb_003470_100 Hb_003470_100 Hb_004007_170--Hb_003470_100 Hb_004007_170--Hb_006681_020 Hb_000146_030 Hb_000146_030 Hb_004007_170--Hb_000146_030 Hb_001047_180 Hb_001047_180 Hb_004007_170--Hb_001047_180 Hb_004007_170--Hb_004855_070 Hb_000768_120--Hb_004855_070 Hb_007479_010 Hb_007479_010 Hb_000768_120--Hb_007479_010 Hb_002495_090 Hb_002495_090 Hb_000768_120--Hb_002495_090 Hb_000768_120--Hb_001999_260 Hb_027298_020 Hb_027298_020 Hb_000703_070--Hb_027298_020 Hb_010557_010 Hb_010557_010 Hb_000703_070--Hb_010557_010 Hb_002411_100 Hb_002411_100 Hb_000703_070--Hb_002411_100 Hb_002811_250 Hb_002811_250 Hb_000703_070--Hb_002811_250 Hb_002232_380 Hb_002232_380 Hb_000703_070--Hb_002232_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.49433 3.14747 52.4114 8.6069 4.40857 3.65955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94436 2.40323 1.61593 3.84468 41.0258

CAGE analysis