Hb_027298_020

Information

Type -
Description -
Location Contig27298: 15365-19874
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05760g
description hypothetical protein
nr
ID XP_006382818.1
description hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9MZB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s05760g PE=4 SV=1
Gene Ontology
ID GO:0009507
description fad nad -binding oxidoreductase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28517: 15370-20103
cDNA
(Sanger)
(ID:Location)		 014_K08.ab1: 15370-16540 , 052_A21.ab1: 15423-18143

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027298_020 0.0 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
2 Hb_000703_070 0.0523352497 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
3 Hb_001300_130 0.0964042084 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
4 Hb_000803_170 0.097879195 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
5 Hb_010557_010 0.1009812126 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
6 Hb_002232_380 0.1047047539 - - malate dehydrogenase, putative [Ricinus communis]
7 Hb_002811_310 0.1059005255 - - hypothetical protein VITISV_025505 [Vitis vinifera]
8 Hb_000193_220 0.1092341524 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
9 Hb_005563_040 0.1092554897 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
10 Hb_002811_250 0.110101842 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
11 Hb_002411_100 0.1101101268 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
12 Hb_005488_160 0.117814389 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
13 Hb_000802_050 0.1184365252 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
14 Hb_003494_030 0.1191669694 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
15 Hb_004117_150 0.1220337871 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
16 Hb_002485_050 0.1259473994 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
17 Hb_010721_020 0.1273087675 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
18 Hb_005488_190 0.127677078 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
19 Hb_007694_060 0.1308892435 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
20 Hb_007803_040 0.1316770231 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_027298_020 Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_027298_020--Hb_000703_070 Hb_001300_130 Hb_001300_130 Hb_027298_020--Hb_001300_130 Hb_000803_170 Hb_000803_170 Hb_027298_020--Hb_000803_170 Hb_010557_010 Hb_010557_010 Hb_027298_020--Hb_010557_010 Hb_002232_380 Hb_002232_380 Hb_027298_020--Hb_002232_380 Hb_002811_310 Hb_002811_310 Hb_027298_020--Hb_002811_310 Hb_000703_070--Hb_010557_010 Hb_002411_100 Hb_002411_100 Hb_000703_070--Hb_002411_100 Hb_004117_150 Hb_004117_150 Hb_000703_070--Hb_004117_150 Hb_002811_250 Hb_002811_250 Hb_000703_070--Hb_002811_250 Hb_000703_070--Hb_002232_380 Hb_000802_050 Hb_000802_050 Hb_001300_130--Hb_000802_050 Hb_001300_130--Hb_000703_070 Hb_003549_140 Hb_003549_140 Hb_001300_130--Hb_003549_140 Hb_000684_430 Hb_000684_430 Hb_001300_130--Hb_000684_430 Hb_005563_040 Hb_005563_040 Hb_001300_130--Hb_005563_040 Hb_000803_170--Hb_002811_250 Hb_000803_170--Hb_010557_010 Hb_000803_170--Hb_005563_040 Hb_000193_220 Hb_000193_220 Hb_000803_170--Hb_000193_220 Hb_000089_140 Hb_000089_140 Hb_000803_170--Hb_000089_140 Hb_001579_280 Hb_001579_280 Hb_000803_170--Hb_001579_280 Hb_010557_010--Hb_002411_100 Hb_010557_010--Hb_002811_250 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_006829_080 Hb_006829_080 Hb_002232_380--Hb_006829_080 Hb_002232_380--Hb_000802_050 Hb_005618_080 Hb_005618_080 Hb_002232_380--Hb_005618_080 Hb_003494_030 Hb_003494_030 Hb_002232_380--Hb_003494_030 Hb_003680_090 Hb_003680_090 Hb_002811_310--Hb_003680_090 Hb_002811_310--Hb_000703_070 Hb_002811_310--Hb_005563_040 Hb_002811_310--Hb_010557_010 Hb_002811_310--Hb_002411_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45395 1.52434 16.5116 3.44776 1.25627 0.896913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28622 1.79388 0.779431 1.97221 22.6663

CAGE analysis