Hb_001300_130

Information

Type -
Description -
Location Contig1300: 100528-104638
Sequence    

Annotation

kegg
ID rcu:RCOM_0556140
description TRANSPORT INHIBITOR RESPONSE 1 protein, putative
nr
ID XP_012082666.1
description PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
swissprot
ID Q570C0
description Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2
trembl
ID A0A067K8E0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13855 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein transport inhibitor response 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08969: 100522-104623 , PASA_asmbl_08971: 103495-103835
cDNA
(Sanger)
(ID:Location)		 021_G03.ab1: 102425-104623

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_130 0.0 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
2 Hb_000802_050 0.084784385 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
3 Hb_027298_020 0.0964042084 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
4 Hb_000703_070 0.1031345618 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
5 Hb_003549_140 0.1059706597 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_000684_430 0.1084494955 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
7 Hb_005563_040 0.1107102281 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
8 Hb_002232_380 0.1173691522 - - malate dehydrogenase, putative [Ricinus communis]
9 Hb_006829_080 0.1174223895 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
10 Hb_002217_140 0.120312994 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
11 Hb_000130_330 0.1207471422 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
12 Hb_000005_130 0.1215633169 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
13 Hb_000322_040 0.1217514923 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
14 Hb_007694_060 0.1244040123 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
15 Hb_005618_080 0.1267932295 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
16 Hb_002411_100 0.1290413349 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
17 Hb_002811_310 0.1304772456 - - hypothetical protein VITISV_025505 [Vitis vinifera]
18 Hb_003494_030 0.1320001562 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
19 Hb_004055_160 0.1329760168 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
20 Hb_005488_160 0.1332789058 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001300_130 Hb_001300_130 Hb_000802_050 Hb_000802_050 Hb_001300_130--Hb_000802_050 Hb_027298_020 Hb_027298_020 Hb_001300_130--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_001300_130--Hb_000703_070 Hb_003549_140 Hb_003549_140 Hb_001300_130--Hb_003549_140 Hb_000684_430 Hb_000684_430 Hb_001300_130--Hb_000684_430 Hb_005563_040 Hb_005563_040 Hb_001300_130--Hb_005563_040 Hb_006829_080 Hb_006829_080 Hb_000802_050--Hb_006829_080 Hb_000802_050--Hb_003549_140 Hb_002232_380 Hb_002232_380 Hb_000802_050--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_000802_050--Hb_000005_130 Hb_000802_050--Hb_000684_430 Hb_027298_020--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_027298_020--Hb_000803_170 Hb_010557_010 Hb_010557_010 Hb_027298_020--Hb_010557_010 Hb_027298_020--Hb_002232_380 Hb_002811_310 Hb_002811_310 Hb_027298_020--Hb_002811_310 Hb_000703_070--Hb_010557_010 Hb_002411_100 Hb_002411_100 Hb_000703_070--Hb_002411_100 Hb_004117_150 Hb_004117_150 Hb_000703_070--Hb_004117_150 Hb_002811_250 Hb_002811_250 Hb_000703_070--Hb_002811_250 Hb_000703_070--Hb_002232_380 Hb_003549_140--Hb_006829_080 Hb_003948_020 Hb_003948_020 Hb_003549_140--Hb_003948_020 Hb_003549_140--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_003549_140--Hb_000045_050 Hb_001959_060 Hb_001959_060 Hb_000684_430--Hb_001959_060 Hb_004055_160 Hb_004055_160 Hb_000684_430--Hb_004055_160 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_000684_430--Hb_006829_080 Hb_148146_010 Hb_148146_010 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040 Hb_005563_040--Hb_000803_170 Hb_005488_160 Hb_005488_160 Hb_005563_040--Hb_005488_160 Hb_005563_040--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_005563_040--Hb_000442_070 Hb_001579_280 Hb_001579_280 Hb_005563_040--Hb_001579_280 Hb_005563_040--Hb_010557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0809 3.6196 57.407 12.8135 5.80266 5.95397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.9337 5.08784 5.26255 5.65095 77.2053

CAGE analysis