Hb_000005_130

Information

Type -
Description -
Location Contig5: 154440-158326
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22660g
description hypothetical protein
nr
ID XP_006384967.1
description hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
swissprot
ID P25864
description 50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana GN=RPL9 PE=2 SV=1
trembl
ID A9PI62
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22660g PE=2 SV=1
Gene Ontology
ID GO:0000311
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_130 0.0 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
2 Hb_006829_080 0.0870396031 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
3 Hb_007426_170 0.0924401687 transcription factor TF Family: TCP -
4 Hb_007694_060 0.094392128 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
5 Hb_000802_050 0.0953442047 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
6 Hb_006620_070 0.0985297573 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
7 Hb_001959_060 0.0993715934 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
8 Hb_004459_060 0.1007847092 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
9 Hb_011114_020 0.1015099035 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
10 Hb_000146_030 0.1094891569 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
11 Hb_002232_380 0.1134201687 - - malate dehydrogenase, putative [Ricinus communis]
12 Hb_005488_160 0.1170789283 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
13 Hb_005618_080 0.1176355136 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
14 Hb_005563_040 0.1196668399 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
15 Hb_002411_100 0.1197930364 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
16 Hb_003038_100 0.1199059767 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
17 Hb_000402_020 0.1209733141 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001300_130 0.1215633169 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
19 Hb_003549_140 0.1215770277 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_000473_050 0.1224809884 - - chromatin regulatory protein sir2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000005_130 Hb_000005_130 Hb_006829_080 Hb_006829_080 Hb_000005_130--Hb_006829_080 Hb_007426_170 Hb_007426_170 Hb_000005_130--Hb_007426_170 Hb_007694_060 Hb_007694_060 Hb_000005_130--Hb_007694_060 Hb_000802_050 Hb_000802_050 Hb_000005_130--Hb_000802_050 Hb_006620_070 Hb_006620_070 Hb_000005_130--Hb_006620_070 Hb_001959_060 Hb_001959_060 Hb_000005_130--Hb_001959_060 Hb_006829_080--Hb_001959_060 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_000684_430 Hb_000684_430 Hb_006829_080--Hb_000684_430 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_004055_160 Hb_004055_160 Hb_006829_080--Hb_004055_160 Hb_007426_170--Hb_001959_060 Hb_007426_170--Hb_006829_080 Hb_000548_060 Hb_000548_060 Hb_007426_170--Hb_000548_060 Hb_000112_060 Hb_000112_060 Hb_007426_170--Hb_000112_060 Hb_000976_190 Hb_000976_190 Hb_007426_170--Hb_000976_190 Hb_004459_060 Hb_004459_060 Hb_007694_060--Hb_004459_060 Hb_007694_060--Hb_006620_070 Hb_005488_160 Hb_005488_160 Hb_007694_060--Hb_005488_160 Hb_023732_050 Hb_023732_050 Hb_007694_060--Hb_023732_050 Hb_001405_090 Hb_001405_090 Hb_007694_060--Hb_001405_090 Hb_001300_130 Hb_001300_130 Hb_000802_050--Hb_001300_130 Hb_000802_050--Hb_006829_080 Hb_003549_140 Hb_003549_140 Hb_000802_050--Hb_003549_140 Hb_000802_050--Hb_002232_380 Hb_000802_050--Hb_000684_430 Hb_006620_070--Hb_004459_060 Hb_006620_070--Hb_001405_090 Hb_002411_100 Hb_002411_100 Hb_006620_070--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_006620_070--Hb_000442_070 Hb_005618_080 Hb_005618_080 Hb_001959_060--Hb_005618_080 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1694 7.46922 109.061 26.3198 5.98697 16.2398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4261 26.8486 11.3726 10.8936 119.783

CAGE analysis