Hb_000976_190

Information

Type -
Description -
Location Contig976: 169366-175658
Sequence    

Annotation

kegg
ID rcu:RCOM_1576430
description GTP-binding protein, putative
nr
ID XP_012087417.1
description PREDICTED: obg-like ATPase 1 [Jatropha curcas]
swissprot
ID P37518
description Ribosome-binding ATPase YchF OS=Bacillus subtilis (strain 168) GN=ychF PE=3 SV=1
trembl
ID A0A067JMB0
description Obg-like ATPase 1 OS=Jatropha curcas GN=JCGZ_22656 PE=3 SV=1
Gene Ontology
ID GO:0009570
description obg-like atpase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64071: 169391-175595
cDNA
(Sanger)
(ID:Location)		 014_A20.ab1: 172998-175564 , 031_F09.ab1: 173024-175568

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_190 0.0 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
2 Hb_011310_140 0.0826438423 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
3 Hb_004871_010 0.0857771453 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
4 Hb_006787_090 0.0934540385 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
5 Hb_000194_010 0.101975759 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
6 Hb_011861_050 0.1038574354 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
7 Hb_007426_170 0.1083158592 transcription factor TF Family: TCP -
8 Hb_001946_160 0.1089944124 - - putative chaperon P13.9 [Castanea sativa]
9 Hb_000144_060 0.1110212917 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000345_370 0.1119663233 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
11 Hb_001959_060 0.1129191944 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
12 Hb_189003_060 0.113253218 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000059_270 0.1135471725 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
14 Hb_000311_120 0.1147049286 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
15 Hb_005276_010 0.1160922516 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
16 Hb_003304_030 0.1177504662 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_001723_030 0.1178530002 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
18 Hb_002997_070 0.1181955238 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
19 Hb_003029_020 0.1183684278 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
20 Hb_002986_090 0.1184090028 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000976_190 Hb_000976_190 Hb_011310_140 Hb_011310_140 Hb_000976_190--Hb_011310_140 Hb_004871_010 Hb_004871_010 Hb_000976_190--Hb_004871_010 Hb_006787_090 Hb_006787_090 Hb_000976_190--Hb_006787_090 Hb_000194_010 Hb_000194_010 Hb_000976_190--Hb_000194_010 Hb_011861_050 Hb_011861_050 Hb_000976_190--Hb_011861_050 Hb_007426_170 Hb_007426_170 Hb_000976_190--Hb_007426_170 Hb_003304_030 Hb_003304_030 Hb_011310_140--Hb_003304_030 Hb_011310_140--Hb_006787_090 Hb_002997_070 Hb_002997_070 Hb_011310_140--Hb_002997_070 Hb_011310_140--Hb_000194_010 Hb_021650_010 Hb_021650_010 Hb_011310_140--Hb_021650_010 Hb_003376_390 Hb_003376_390 Hb_004871_010--Hb_003376_390 Hb_000260_710 Hb_000260_710 Hb_004871_010--Hb_000260_710 Hb_004871_010--Hb_006787_090 Hb_002928_030 Hb_002928_030 Hb_004871_010--Hb_002928_030 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060 Hb_000311_120 Hb_000311_120 Hb_006787_090--Hb_000311_120 Hb_010174_090 Hb_010174_090 Hb_006787_090--Hb_010174_090 Hb_003752_070 Hb_003752_070 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_000061_150 Hb_000061_150 Hb_000194_010--Hb_000061_150 Hb_001454_150 Hb_001454_150 Hb_000194_010--Hb_001454_150 Hb_000181_060 Hb_000181_060 Hb_000194_010--Hb_000181_060 Hb_012653_030 Hb_012653_030 Hb_000194_010--Hb_012653_030 Hb_000480_040 Hb_000480_040 Hb_011861_050--Hb_000480_040 Hb_011861_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_011861_050--Hb_000345_370 Hb_000309_020 Hb_000309_020 Hb_011861_050--Hb_000309_020 Hb_000941_100 Hb_000941_100 Hb_011861_050--Hb_000941_100 Hb_005147_080 Hb_005147_080 Hb_011861_050--Hb_005147_080 Hb_000005_130 Hb_000005_130 Hb_007426_170--Hb_000005_130 Hb_007426_170--Hb_001959_060 Hb_006829_080 Hb_006829_080 Hb_007426_170--Hb_006829_080 Hb_000548_060 Hb_000548_060 Hb_007426_170--Hb_000548_060 Hb_000112_060 Hb_000112_060 Hb_007426_170--Hb_000112_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.03414 3.91531 23.1666 6.73065 4.65058 7.51154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.9449 8.42012 3.91899 3.84573 29.8321

CAGE analysis