Hb_003304_030

Information

Type -
Description -
Location Contig3304: 22351-27877
Sequence    

Annotation

kegg
ID pmum:103320285
description uroporphyrinogen-III synthase, chloroplastic
nr
ID XP_012071698.1
description PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID O48721
description Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis thaliana GN=UROS PE=2 SV=2
trembl
ID A0A067L1M8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04315 PE=4 SV=1
Gene Ontology
ID GO:0004852
description uroporphyrinogen-iii synthase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34719: 22263-22487 , PASA_asmbl_34720: 23784-25298 , PASA_asmbl_34721: 25047-25312 , PASA_asmbl_34723: 26478-27751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003304_030 0.0 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_025194_060 0.0933592394 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_011310_140 0.0952570406 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
4 Hb_021650_040 0.1010527125 - - EG2771 [Manihot esculenta]
5 Hb_001946_160 0.1066020031 - - putative chaperon P13.9 [Castanea sativa]
6 Hb_005127_030 0.1169649704 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000976_190 0.1177504662 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
8 Hb_006538_120 0.1186418603 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
9 Hb_019053_060 0.1204506457 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
10 Hb_000061_150 0.1241100211 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
11 Hb_001946_140 0.1243756214 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
12 Hb_000051_060 0.1265574634 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001863_120 0.1286044692 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_009775_010 0.1311246626 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
15 Hb_012305_100 0.1311946921 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
16 Hb_005276_010 0.1316554496 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
17 Hb_001410_070 0.1355853661 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
18 Hb_007534_050 0.1376863474 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_005539_010 0.1378206912 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
20 Hb_000462_090 0.1391105068 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003304_030 Hb_003304_030 Hb_025194_060 Hb_025194_060 Hb_003304_030--Hb_025194_060 Hb_011310_140 Hb_011310_140 Hb_003304_030--Hb_011310_140 Hb_021650_040 Hb_021650_040 Hb_003304_030--Hb_021650_040 Hb_001946_160 Hb_001946_160 Hb_003304_030--Hb_001946_160 Hb_005127_030 Hb_005127_030 Hb_003304_030--Hb_005127_030 Hb_000976_190 Hb_000976_190 Hb_003304_030--Hb_000976_190 Hb_025194_060--Hb_021650_040 Hb_025194_060--Hb_001946_160 Hb_019053_060 Hb_019053_060 Hb_025194_060--Hb_019053_060 Hb_025194_060--Hb_005127_030 Hb_005539_010 Hb_005539_010 Hb_025194_060--Hb_005539_010 Hb_011310_140--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_011310_140--Hb_006787_090 Hb_002997_070 Hb_002997_070 Hb_011310_140--Hb_002997_070 Hb_000194_010 Hb_000194_010 Hb_011310_140--Hb_000194_010 Hb_021650_010 Hb_021650_010 Hb_011310_140--Hb_021650_010 Hb_001946_140 Hb_001946_140 Hb_021650_040--Hb_001946_140 Hb_021650_040--Hb_001946_160 Hb_021650_040--Hb_019053_060 Hb_001769_170 Hb_001769_170 Hb_021650_040--Hb_001769_170 Hb_005276_010 Hb_005276_010 Hb_001946_160--Hb_005276_010 Hb_000941_100 Hb_000941_100 Hb_001946_160--Hb_000941_100 Hb_001946_160--Hb_005127_030 Hb_006538_120 Hb_006538_120 Hb_001946_160--Hb_006538_120 Hb_002053_010 Hb_002053_010 Hb_001946_160--Hb_002053_010 Hb_005127_030--Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_005127_030--Hb_000221_140 Hb_007534_050 Hb_007534_050 Hb_005127_030--Hb_007534_050 Hb_005731_160 Hb_005731_160 Hb_005127_030--Hb_005731_160 Hb_012150_030 Hb_012150_030 Hb_005127_030--Hb_012150_030 Hb_000212_440 Hb_000212_440 Hb_005127_030--Hb_000212_440 Hb_004871_010 Hb_004871_010 Hb_000976_190--Hb_004871_010 Hb_000976_190--Hb_006787_090 Hb_000976_190--Hb_000194_010 Hb_011861_050 Hb_011861_050 Hb_000976_190--Hb_011861_050 Hb_007426_170 Hb_007426_170 Hb_000976_190--Hb_007426_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37172 0.318143 5.16514 1.41085 1.4015 2.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97037 2.52696 1.31309 1.05368 5.63337

CAGE analysis