Hb_002997_070

Information

Type -
Description -
Location Contig2997: 64105-67451
Sequence    

Annotation

kegg
ID rcu:RCOM_0216630
description 50S ribosomal protein L13, putative
nr
ID XP_012068509.1
description PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
swissprot
ID Q9SYL9
description 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 SV=1
trembl
ID A0A067L1A7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03565 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31294: 63809-67447 , PASA_asmbl_31295: 65105-65502 , PASA_asmbl_31296: 65823-65982
cDNA
(Sanger)
(ID:Location)		 002_A05.ab1: 64285-67443 , 005_H11.ab1: 64280-67447 , 007_D04.ab1: 64266-67443

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002997_070 0.0 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
2 Hb_011310_140 0.0971380004 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
3 Hb_006787_090 0.0997869402 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
4 Hb_000144_060 0.1007676557 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000976_190 0.1181955238 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
6 Hb_003752_070 0.1204239176 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
7 Hb_021650_010 0.1237589757 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
8 Hb_000284_130 0.1250693446 - - sodium-bile acid cotransporter, putative [Ricinus communis]
9 Hb_008206_060 0.1269484071 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000311_120 0.1273232639 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
11 Hb_031284_070 0.1287232217 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
12 Hb_000331_130 0.1297441232 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
13 Hb_001660_120 0.1298060865 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
14 Hb_000194_010 0.1309290882 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
15 Hb_011861_050 0.1311021525 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
16 Hb_000363_060 0.1332118906 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
17 Hb_004871_010 0.1340039594 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
18 Hb_000345_370 0.1342331751 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
19 Hb_002027_410 0.1352620128 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
20 Hb_001454_150 0.1352967144 - - isoleucyl tRNA synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002997_070 Hb_002997_070 Hb_011310_140 Hb_011310_140 Hb_002997_070--Hb_011310_140 Hb_006787_090 Hb_006787_090 Hb_002997_070--Hb_006787_090 Hb_000144_060 Hb_000144_060 Hb_002997_070--Hb_000144_060 Hb_000976_190 Hb_000976_190 Hb_002997_070--Hb_000976_190 Hb_003752_070 Hb_003752_070 Hb_002997_070--Hb_003752_070 Hb_021650_010 Hb_021650_010 Hb_002997_070--Hb_021650_010 Hb_011310_140--Hb_000976_190 Hb_003304_030 Hb_003304_030 Hb_011310_140--Hb_003304_030 Hb_011310_140--Hb_006787_090 Hb_000194_010 Hb_000194_010 Hb_011310_140--Hb_000194_010 Hb_011310_140--Hb_021650_010 Hb_000311_120 Hb_000311_120 Hb_006787_090--Hb_000311_120 Hb_010174_090 Hb_010174_090 Hb_006787_090--Hb_010174_090 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_006787_090--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_000144_060--Hb_000345_370 Hb_000309_020 Hb_000309_020 Hb_000144_060--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000144_060--Hb_011861_050 Hb_025477_050 Hb_025477_050 Hb_000144_060--Hb_025477_050 Hb_002542_160 Hb_002542_160 Hb_000144_060--Hb_002542_160 Hb_002282_070 Hb_002282_070 Hb_000144_060--Hb_002282_070 Hb_004871_010 Hb_004871_010 Hb_000976_190--Hb_004871_010 Hb_000976_190--Hb_006787_090 Hb_000976_190--Hb_000194_010 Hb_000976_190--Hb_011861_050 Hb_007426_170 Hb_007426_170 Hb_000976_190--Hb_007426_170 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_005162_110 Hb_005162_110 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_003752_070--Hb_010174_090 Hb_021650_010--Hb_005162_110 Hb_001232_150 Hb_001232_150 Hb_021650_010--Hb_001232_150 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_021650_010--Hb_001195_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.7479 23.2189 97.5964 22.1358 23.7009 45.0519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2932 20.8902 11.8128 20.0803 114.641

CAGE analysis