Hb_011310_140

Information

Type -
Description -
Location Contig11310: 74653-75708
Sequence    

Annotation

kegg
ID rcu:RCOM_0924110
description hypothetical protein
nr
ID KDP33602.1
description hypothetical protein JCGZ_07173 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07173 PE=4 SV=1
Gene Ontology
ID GO:0031072
description hsp40 cysteine-rich domain superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03913: 74564-75375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_140 0.0 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
2 Hb_000976_190 0.0826438423 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
3 Hb_003304_030 0.0952570406 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_006787_090 0.0962551651 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
5 Hb_002997_070 0.0971380004 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
6 Hb_000194_010 0.1037342978 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
7 Hb_021650_010 0.1056697867 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
8 Hb_003752_070 0.1064075651 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
9 Hb_000051_060 0.11145396 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004586_430 0.1118879773 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
11 Hb_000061_150 0.120067008 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
12 Hb_000284_130 0.1204400912 - - sodium-bile acid cotransporter, putative [Ricinus communis]
13 Hb_000260_430 0.1224420798 - - ribosomal protein L17, putative [Ricinus communis]
14 Hb_001232_150 0.1224864489 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
15 Hb_006538_120 0.1225098013 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
16 Hb_025194_060 0.1231486127 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_001946_160 0.1242211423 - - putative chaperon P13.9 [Castanea sativa]
18 Hb_001195_270 0.1243387862 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
19 Hb_005527_010 0.1260913614 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001410_070 0.1293119708 - - hypothetical protein JCGZ_20421 [Jatropha curcas]

Gene co-expression network

sample Hb_011310_140 Hb_011310_140 Hb_000976_190 Hb_000976_190 Hb_011310_140--Hb_000976_190 Hb_003304_030 Hb_003304_030 Hb_011310_140--Hb_003304_030 Hb_006787_090 Hb_006787_090 Hb_011310_140--Hb_006787_090 Hb_002997_070 Hb_002997_070 Hb_011310_140--Hb_002997_070 Hb_000194_010 Hb_000194_010 Hb_011310_140--Hb_000194_010 Hb_021650_010 Hb_021650_010 Hb_011310_140--Hb_021650_010 Hb_004871_010 Hb_004871_010 Hb_000976_190--Hb_004871_010 Hb_000976_190--Hb_006787_090 Hb_000976_190--Hb_000194_010 Hb_011861_050 Hb_011861_050 Hb_000976_190--Hb_011861_050 Hb_007426_170 Hb_007426_170 Hb_000976_190--Hb_007426_170 Hb_025194_060 Hb_025194_060 Hb_003304_030--Hb_025194_060 Hb_021650_040 Hb_021650_040 Hb_003304_030--Hb_021650_040 Hb_001946_160 Hb_001946_160 Hb_003304_030--Hb_001946_160 Hb_005127_030 Hb_005127_030 Hb_003304_030--Hb_005127_030 Hb_003304_030--Hb_000976_190 Hb_000311_120 Hb_000311_120 Hb_006787_090--Hb_000311_120 Hb_010174_090 Hb_010174_090 Hb_006787_090--Hb_010174_090 Hb_003752_070 Hb_003752_070 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_002997_070--Hb_006787_090 Hb_002997_070--Hb_000144_060 Hb_002997_070--Hb_000976_190 Hb_002997_070--Hb_003752_070 Hb_002997_070--Hb_021650_010 Hb_000061_150 Hb_000061_150 Hb_000194_010--Hb_000061_150 Hb_001454_150 Hb_001454_150 Hb_000194_010--Hb_001454_150 Hb_000181_060 Hb_000181_060 Hb_000194_010--Hb_000181_060 Hb_012653_030 Hb_012653_030 Hb_000194_010--Hb_012653_030 Hb_021650_010--Hb_003752_070 Hb_005162_110 Hb_005162_110 Hb_021650_010--Hb_005162_110 Hb_001232_150 Hb_001232_150 Hb_021650_010--Hb_001232_150 Hb_000051_060 Hb_000051_060 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_001195_270 Hb_001195_270 Hb_021650_010--Hb_001195_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.36496 2.50691 18.7281 4.84695 4.74106 7.22627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.86924 6.10891 3.08845 1.9752 18.9393

CAGE analysis