Hb_025194_060

Information

Type -
Description -
Location Contig25194: 37296-39917
Sequence    

Annotation

kegg
ID rcu:RCOM_1078960
description peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8)
nr
ID XP_012085734.1
description PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9ASS6
description Photosynthetic NDH subunit of lumenal location 5, chloroplastic OS=Arabidopsis thaliana GN=PNSL5 PE=1 SV=1
trembl
ID A0A067JSJ0
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_18005 PE=3 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase cyp20- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26340: 37364-39880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025194_060 0.0 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_021650_040 0.0872397067 - - EG2771 [Manihot esculenta]
3 Hb_001946_160 0.0884431781 - - putative chaperon P13.9 [Castanea sativa]
4 Hb_003304_030 0.0933592394 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_019053_060 0.0973706548 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
6 Hb_005127_030 0.0995861997 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_005539_010 0.1001392167 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
8 Hb_001863_120 0.1043429894 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_006538_120 0.1051102983 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
10 Hb_000051_060 0.1074024187 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001935_100 0.10747203 - - structural molecule, putative [Ricinus communis]
12 Hb_002986_090 0.1078805149 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_001195_460 0.1094302969 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
14 Hb_001022_030 0.1119459405 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
15 Hb_001946_140 0.1129664902 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
16 Hb_006907_060 0.1144326999 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
17 Hb_000941_100 0.1147910536 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
18 Hb_003752_070 0.1153912188 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
19 Hb_004440_060 0.1161227616 - - aldose 1-epimerase, putative [Ricinus communis]
20 Hb_005946_040 0.1164445836 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_025194_060 Hb_025194_060 Hb_021650_040 Hb_021650_040 Hb_025194_060--Hb_021650_040 Hb_001946_160 Hb_001946_160 Hb_025194_060--Hb_001946_160 Hb_003304_030 Hb_003304_030 Hb_025194_060--Hb_003304_030 Hb_019053_060 Hb_019053_060 Hb_025194_060--Hb_019053_060 Hb_005127_030 Hb_005127_030 Hb_025194_060--Hb_005127_030 Hb_005539_010 Hb_005539_010 Hb_025194_060--Hb_005539_010 Hb_001946_140 Hb_001946_140 Hb_021650_040--Hb_001946_140 Hb_021650_040--Hb_003304_030 Hb_021650_040--Hb_001946_160 Hb_021650_040--Hb_019053_060 Hb_001769_170 Hb_001769_170 Hb_021650_040--Hb_001769_170 Hb_005276_010 Hb_005276_010 Hb_001946_160--Hb_005276_010 Hb_000941_100 Hb_000941_100 Hb_001946_160--Hb_000941_100 Hb_001946_160--Hb_005127_030 Hb_006538_120 Hb_006538_120 Hb_001946_160--Hb_006538_120 Hb_002053_010 Hb_002053_010 Hb_001946_160--Hb_002053_010 Hb_011310_140 Hb_011310_140 Hb_003304_030--Hb_011310_140 Hb_003304_030--Hb_001946_160 Hb_003304_030--Hb_005127_030 Hb_000976_190 Hb_000976_190 Hb_003304_030--Hb_000976_190 Hb_009252_060 Hb_009252_060 Hb_019053_060--Hb_009252_060 Hb_000487_260 Hb_000487_260 Hb_019053_060--Hb_000487_260 Hb_000173_250 Hb_000173_250 Hb_019053_060--Hb_000173_250 Hb_001935_100 Hb_001935_100 Hb_019053_060--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_019053_060--Hb_001410_070 Hb_019053_060--Hb_001946_160 Hb_005127_030--Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_005127_030--Hb_000221_140 Hb_007534_050 Hb_007534_050 Hb_005127_030--Hb_007534_050 Hb_005731_160 Hb_005731_160 Hb_005127_030--Hb_005731_160 Hb_012150_030 Hb_012150_030 Hb_005127_030--Hb_012150_030 Hb_000212_440 Hb_000212_440 Hb_005127_030--Hb_000212_440 Hb_005539_010--Hb_006538_120 Hb_005539_010--Hb_000212_440 Hb_005539_010--Hb_000941_100 Hb_005539_010--Hb_001935_100 Hb_000227_170 Hb_000227_170 Hb_005539_010--Hb_000227_170 Hb_005539_010--Hb_012150_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6559 8.46364 68.6253 31.9424 22.9244 22.0934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.403 41.0913 13.0827 17.4159 68.4668

CAGE analysis