Hb_019053_060

Information

Type -
Description -
Location Contig19053: 62422-64475
Sequence    

Annotation

kegg
ID rcu:RCOM_1677380
description structural constituent of ribosome, putative
nr
ID XP_012070510.1
description PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
swissprot
ID P82024
description 30S ribosomal protein S21, chloroplastic (Fragment) OS=Spinacia oleracea GN=rps21 PE=1 SV=1
trembl
ID A0A067LN88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10130 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein s21 family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19005: 62393-64430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019053_060 0.0 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
2 Hb_009252_060 0.073407203 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
3 Hb_000487_260 0.0797596552 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
4 Hb_000173_250 0.080129302 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
5 Hb_001935_100 0.0844904975 - - structural molecule, putative [Ricinus communis]
6 Hb_001410_070 0.0965331388 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
7 Hb_001946_160 0.0971440931 - - putative chaperon P13.9 [Castanea sativa]
8 Hb_025194_060 0.0973706548 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_001863_120 0.0987793686 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
10 Hb_001195_460 0.0995457353 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
11 Hb_001587_180 0.1002744244 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
12 Hb_009775_010 0.1019011245 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
13 Hb_021650_040 0.1032712068 - - EG2771 [Manihot esculenta]
14 Hb_001541_110 0.1060931884 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_005946_040 0.1061602034 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
16 Hb_000796_160 0.1062287945 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
17 Hb_000051_060 0.1079368132 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001900_140 0.1084250692 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
19 Hb_007558_090 0.1099703478 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000811_070 0.1136636256 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]

Gene co-expression network

sample Hb_019053_060 Hb_019053_060 Hb_009252_060 Hb_009252_060 Hb_019053_060--Hb_009252_060 Hb_000487_260 Hb_000487_260 Hb_019053_060--Hb_000487_260 Hb_000173_250 Hb_000173_250 Hb_019053_060--Hb_000173_250 Hb_001935_100 Hb_001935_100 Hb_019053_060--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_019053_060--Hb_001410_070 Hb_001946_160 Hb_001946_160 Hb_019053_060--Hb_001946_160 Hb_002893_110 Hb_002893_110 Hb_009252_060--Hb_002893_110 Hb_000390_090 Hb_000390_090 Hb_009252_060--Hb_000390_090 Hb_001863_120 Hb_001863_120 Hb_009252_060--Hb_001863_120 Hb_007416_050 Hb_007416_050 Hb_009252_060--Hb_007416_050 Hb_000413_060 Hb_000413_060 Hb_009252_060--Hb_000413_060 Hb_000811_070 Hb_000811_070 Hb_000487_260--Hb_000811_070 Hb_006846_150 Hb_006846_150 Hb_000487_260--Hb_006846_150 Hb_000796_160 Hb_000796_160 Hb_000487_260--Hb_000796_160 Hb_000487_260--Hb_001935_100 Hb_008421_020 Hb_008421_020 Hb_000487_260--Hb_008421_020 Hb_009775_010 Hb_009775_010 Hb_000173_250--Hb_009775_010 Hb_000462_090 Hb_000462_090 Hb_000173_250--Hb_000462_090 Hb_011689_120 Hb_011689_120 Hb_000173_250--Hb_011689_120 Hb_000173_250--Hb_000487_260 Hb_000173_250--Hb_006846_150 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_000227_170 Hb_000227_170 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001935_100--Hb_001410_070 Hb_001935_100--Hb_000796_160 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_006538_120 Hb_006538_120 Hb_001410_070--Hb_006538_120 Hb_001410_070--Hb_000796_160 Hb_000025_780 Hb_000025_780 Hb_001410_070--Hb_000025_780 Hb_001410_070--Hb_009775_010 Hb_001410_070--Hb_005539_010 Hb_005276_010 Hb_005276_010 Hb_001946_160--Hb_005276_010 Hb_000941_100 Hb_000941_100 Hb_001946_160--Hb_000941_100 Hb_025194_060 Hb_025194_060 Hb_001946_160--Hb_025194_060 Hb_005127_030 Hb_005127_030 Hb_001946_160--Hb_005127_030 Hb_001946_160--Hb_006538_120 Hb_002053_010 Hb_002053_010 Hb_001946_160--Hb_002053_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.5354 23.5154 97.5766 35.5199 26.2212 31.7333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.0135 78.201 34.5084 19.5435 102.074

CAGE analysis