Hb_007416_050

Information

Type transcription factor
Description TF Family: Orphans
Location Contig7416: 27844-32353
Sequence    

Annotation

kegg
ID pop:POPTR_0018s03320g
description POPTRDRAFT_261596; hypothetical protein
nr
ID XP_012076368.1
description PREDICTED: histidine kinase 5 [Jatropha curcas]
swissprot
ID Q3S4A7
description Histidine kinase 5 OS=Arabidopsis thaliana GN=AHK5 PE=1 SV=1
trembl
ID A0A067KMF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07041 PE=4 SV=1
Gene Ontology
ID GO:0016020
description histidine kinase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56400: 27690-28886 , PASA_asmbl_56402: 29774-30955 , PASA_asmbl_56403: 30973-31683 , PASA_asmbl_56405: 33291-33395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_050 0.0 transcription factor TF Family: Orphans PREDICTED: histidine kinase 5 [Jatropha curcas]
2 Hb_009252_060 0.1051425561 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
3 Hb_000390_090 0.1146639235 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
4 Hb_019053_060 0.1311625497 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
5 Hb_029866_120 0.1399972783 - - hypothetical protein CICLE_v10006070mg [Citrus clementina]
6 Hb_001369_610 0.1412032657 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
7 Hb_000877_080 0.1415179675 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
8 Hb_001558_080 0.1442699761 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000487_260 0.1472587056 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
10 Hb_000173_250 0.1498538423 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
11 Hb_000413_240 0.1500704624 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
12 Hb_003077_020 0.1515480686 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000413_060 0.151577915 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
14 Hb_001811_160 0.153678565 - - PREDICTED: probable glycosyltransferase At5g03795 [Eucalyptus grandis]
15 Hb_044653_040 0.1572290583 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
16 Hb_006198_070 0.1576860742 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
17 Hb_001712_070 0.1590486711 - - PREDICTED: HD domain-containing protein 2 [Jatropha curcas]
18 Hb_002307_180 0.1595495913 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
19 Hb_018133_020 0.1612988738 - - transporter, putative [Ricinus communis]
20 Hb_011053_010 0.1617678606 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_050 Hb_007416_050 Hb_009252_060 Hb_009252_060 Hb_007416_050--Hb_009252_060 Hb_000390_090 Hb_000390_090 Hb_007416_050--Hb_000390_090 Hb_019053_060 Hb_019053_060 Hb_007416_050--Hb_019053_060 Hb_029866_120 Hb_029866_120 Hb_007416_050--Hb_029866_120 Hb_001369_610 Hb_001369_610 Hb_007416_050--Hb_001369_610 Hb_000877_080 Hb_000877_080 Hb_007416_050--Hb_000877_080 Hb_009252_060--Hb_019053_060 Hb_002893_110 Hb_002893_110 Hb_009252_060--Hb_002893_110 Hb_009252_060--Hb_000390_090 Hb_001863_120 Hb_001863_120 Hb_009252_060--Hb_001863_120 Hb_000413_060 Hb_000413_060 Hb_009252_060--Hb_000413_060 Hb_000413_240 Hb_000413_240 Hb_000390_090--Hb_000413_240 Hb_000390_090--Hb_000413_060 Hb_000163_100 Hb_000163_100 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010 Hb_000487_260 Hb_000487_260 Hb_019053_060--Hb_000487_260 Hb_000173_250 Hb_000173_250 Hb_019053_060--Hb_000173_250 Hb_001935_100 Hb_001935_100 Hb_019053_060--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_019053_060--Hb_001410_070 Hb_001946_160 Hb_001946_160 Hb_019053_060--Hb_001946_160 Hb_001195_460 Hb_001195_460 Hb_029866_120--Hb_001195_460 Hb_029866_120--Hb_000487_260 Hb_013405_020 Hb_013405_020 Hb_029866_120--Hb_013405_020 Hb_003077_020 Hb_003077_020 Hb_029866_120--Hb_003077_020 Hb_029866_120--Hb_000413_240 Hb_000137_040 Hb_000137_040 Hb_029866_120--Hb_000137_040 Hb_001369_610--Hb_001935_100 Hb_000796_160 Hb_000796_160 Hb_001369_610--Hb_000796_160 Hb_000051_060 Hb_000051_060 Hb_001369_610--Hb_000051_060 Hb_000025_780 Hb_000025_780 Hb_001369_610--Hb_000025_780 Hb_000227_170 Hb_000227_170 Hb_001369_610--Hb_000227_170 Hb_003029_070 Hb_003029_070 Hb_001369_610--Hb_003029_070 Hb_001056_030 Hb_001056_030 Hb_000877_080--Hb_001056_030 Hb_001712_020 Hb_001712_020 Hb_000877_080--Hb_001712_020 Hb_007827_010 Hb_007827_010 Hb_000877_080--Hb_007827_010 Hb_001318_260 Hb_001318_260 Hb_000877_080--Hb_001318_260 Hb_002872_050 Hb_002872_050 Hb_000877_080--Hb_002872_050 Hb_003349_030 Hb_003349_030 Hb_000877_080--Hb_003349_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.991776 1.24877 4.20908 1.27354 1.56173 1.63297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78968 6.56852 1.53054 0.777497 3.67875

CAGE analysis