Hb_002893_110

Information

Type transcription factor
Description TF Family: DBP
Location Contig2893: 72471-76186
Sequence    

Annotation

kegg
ID rcu:RCOM_1053570
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076657.1
description PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
swissprot
ID Q9SLA1
description Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=2 SV=1
trembl
ID A0A067KPC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07215 PE=3 SV=1
Gene Ontology
ID GO:0005634
description probable protein phosphatase 2c 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30277: 72453-76139 , PASA_asmbl_30278: 72500-78556 , PASA_asmbl_30279: 75047-75204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_110 0.0 transcription factor TF Family: DBP PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
2 Hb_009252_060 0.0844769361 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
3 Hb_007558_090 0.1260659162 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000390_090 0.1282636974 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
5 Hb_001863_120 0.131886427 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_019053_060 0.1338212952 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
7 Hb_015967_030 0.1343183028 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
8 Hb_000008_370 0.1472266103 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
9 Hb_001124_190 0.1475046999 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000926_080 0.1495390536 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
11 Hb_001541_110 0.1511924778 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_001711_120 0.1522149899 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
13 Hb_001301_340 0.1536634205 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
14 Hb_000035_240 0.1571708796 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000413_060 0.1572922688 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
16 Hb_001558_080 0.1574948352 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_002986_090 0.1581550311 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_001269_470 0.1582497467 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
19 Hb_027472_100 0.1608224112 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
20 Hb_007199_020 0.1609638355 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]

Gene co-expression network

sample Hb_002893_110 Hb_002893_110 Hb_009252_060 Hb_009252_060 Hb_002893_110--Hb_009252_060 Hb_007558_090 Hb_007558_090 Hb_002893_110--Hb_007558_090 Hb_000390_090 Hb_000390_090 Hb_002893_110--Hb_000390_090 Hb_001863_120 Hb_001863_120 Hb_002893_110--Hb_001863_120 Hb_019053_060 Hb_019053_060 Hb_002893_110--Hb_019053_060 Hb_015967_030 Hb_015967_030 Hb_002893_110--Hb_015967_030 Hb_009252_060--Hb_019053_060 Hb_009252_060--Hb_000390_090 Hb_009252_060--Hb_001863_120 Hb_007416_050 Hb_007416_050 Hb_009252_060--Hb_007416_050 Hb_000413_060 Hb_000413_060 Hb_009252_060--Hb_000413_060 Hb_029622_120 Hb_029622_120 Hb_007558_090--Hb_029622_120 Hb_001900_140 Hb_001900_140 Hb_007558_090--Hb_001900_140 Hb_005946_040 Hb_005946_040 Hb_007558_090--Hb_005946_040 Hb_000537_100 Hb_000537_100 Hb_007558_090--Hb_000537_100 Hb_049575_010 Hb_049575_010 Hb_007558_090--Hb_049575_010 Hb_000926_080 Hb_000926_080 Hb_007558_090--Hb_000926_080 Hb_000413_240 Hb_000413_240 Hb_000390_090--Hb_000413_240 Hb_000390_090--Hb_000413_060 Hb_000163_100 Hb_000163_100 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010 Hb_001541_110 Hb_001541_110 Hb_001863_120--Hb_001541_110 Hb_001863_120--Hb_019053_060 Hb_027472_100 Hb_027472_100 Hb_001863_120--Hb_027472_100 Hb_001946_160 Hb_001946_160 Hb_001863_120--Hb_001946_160 Hb_025194_060 Hb_025194_060 Hb_001863_120--Hb_025194_060 Hb_000487_260 Hb_000487_260 Hb_019053_060--Hb_000487_260 Hb_000173_250 Hb_000173_250 Hb_019053_060--Hb_000173_250 Hb_001935_100 Hb_001935_100 Hb_019053_060--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_019053_060--Hb_001410_070 Hb_019053_060--Hb_001946_160 Hb_015967_030--Hb_007558_090 Hb_000235_070 Hb_000235_070 Hb_015967_030--Hb_000235_070 Hb_000116_250 Hb_000116_250 Hb_015967_030--Hb_000116_250 Hb_015967_030--Hb_000926_080 Hb_027506_040 Hb_027506_040 Hb_015967_030--Hb_027506_040 Hb_015967_030--Hb_049575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.66112 2.85608 22.5442 6.61884 2.75337 3.59387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26888 17.9828 7.81233 4.36077 16.714

CAGE analysis