Hb_027472_100

Information

Type -
Description -
Location Contig27472: 80319-82599
Sequence    

Annotation

kegg
ID rcu:RCOM_1574690
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_012087368.1
description PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
swissprot
ID O34614
description Putative rRNA methylase YtqB OS=Bacillus subtilis (strain 168) GN=ytqB PE=3 SV=1
trembl
ID B9RHZ5
description S-adenosylmethionine-dependent methyltransferase, putative OS=Ricinus communis GN=RCOM_1574690 PE=4 SV=1
Gene Ontology
ID GO:0009507
description rrna methylase ytqb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28762: 80434-80560 , PASA_asmbl_28763: 80968-82623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_100 0.0 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
2 Hb_001863_120 0.100433457 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_003038_100 0.1115535704 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
4 Hb_001946_160 0.1226056074 - - putative chaperon P13.9 [Castanea sativa]
5 Hb_003813_020 0.1268198667 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
6 Hb_021650_040 0.1374533556 - - EG2771 [Manihot esculenta]
7 Hb_009252_060 0.1384617143 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
8 Hb_000035_240 0.139990086 - - conserved hypothetical protein [Ricinus communis]
9 Hb_019053_060 0.1409887449 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
10 Hb_009780_050 0.1446557268 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
11 Hb_000112_060 0.145835866 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
12 Hb_002053_010 0.1460233301 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
13 Hb_000008_370 0.1473252697 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
14 Hb_000627_300 0.1488795145 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
15 Hb_008695_200 0.1494988682 - - Protein grpE, putative [Ricinus communis]
16 Hb_000176_010 0.1496450051 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
17 Hb_025194_060 0.1508942795 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_001711_120 0.1524983428 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
19 Hb_004440_060 0.1531461986 - - aldose 1-epimerase, putative [Ricinus communis]
20 Hb_001322_230 0.1545402827 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]

Gene co-expression network

sample Hb_027472_100 Hb_027472_100 Hb_001863_120 Hb_001863_120 Hb_027472_100--Hb_001863_120 Hb_003038_100 Hb_003038_100 Hb_027472_100--Hb_003038_100 Hb_001946_160 Hb_001946_160 Hb_027472_100--Hb_001946_160 Hb_003813_020 Hb_003813_020 Hb_027472_100--Hb_003813_020 Hb_021650_040 Hb_021650_040 Hb_027472_100--Hb_021650_040 Hb_009252_060 Hb_009252_060 Hb_027472_100--Hb_009252_060 Hb_001541_110 Hb_001541_110 Hb_001863_120--Hb_001541_110 Hb_019053_060 Hb_019053_060 Hb_001863_120--Hb_019053_060 Hb_001863_120--Hb_001946_160 Hb_001863_120--Hb_009252_060 Hb_025194_060 Hb_025194_060 Hb_001863_120--Hb_025194_060 Hb_000005_130 Hb_000005_130 Hb_003038_100--Hb_000005_130 Hb_011114_020 Hb_011114_020 Hb_003038_100--Hb_011114_020 Hb_005914_050 Hb_005914_050 Hb_003038_100--Hb_005914_050 Hb_002150_130 Hb_002150_130 Hb_003038_100--Hb_002150_130 Hb_004117_040 Hb_004117_040 Hb_003038_100--Hb_004117_040 Hb_005276_010 Hb_005276_010 Hb_001946_160--Hb_005276_010 Hb_000941_100 Hb_000941_100 Hb_001946_160--Hb_000941_100 Hb_001946_160--Hb_025194_060 Hb_005127_030 Hb_005127_030 Hb_001946_160--Hb_005127_030 Hb_006538_120 Hb_006538_120 Hb_001946_160--Hb_006538_120 Hb_002053_010 Hb_002053_010 Hb_001946_160--Hb_002053_010 Hb_001790_030 Hb_001790_030 Hb_003813_020--Hb_001790_030 Hb_007534_050 Hb_007534_050 Hb_003813_020--Hb_007534_050 Hb_000112_060 Hb_000112_060 Hb_003813_020--Hb_000112_060 Hb_000164_140 Hb_000164_140 Hb_003813_020--Hb_000164_140 Hb_003813_020--Hb_001946_160 Hb_158845_050 Hb_158845_050 Hb_003813_020--Hb_158845_050 Hb_021650_040--Hb_025194_060 Hb_001946_140 Hb_001946_140 Hb_021650_040--Hb_001946_140 Hb_003304_030 Hb_003304_030 Hb_021650_040--Hb_003304_030 Hb_021650_040--Hb_001946_160 Hb_021650_040--Hb_019053_060 Hb_001769_170 Hb_001769_170 Hb_021650_040--Hb_001769_170 Hb_009252_060--Hb_019053_060 Hb_002893_110 Hb_002893_110 Hb_009252_060--Hb_002893_110 Hb_000390_090 Hb_000390_090 Hb_009252_060--Hb_000390_090 Hb_007416_050 Hb_007416_050 Hb_009252_060--Hb_007416_050 Hb_000413_060 Hb_000413_060 Hb_009252_060--Hb_000413_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.781529 0.439466 3.57398 1.33615 0.133868 1.01923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33926 2.51175 0.596025 0.651879 3.72596

CAGE analysis