Hb_158845_050

Information

Type -
Description -
Location Contig158845: 52102-55395
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18370g
description POPTRDRAFT_554915; hypothetical protein
nr
ID XP_011020558.1
description PREDICTED: uncharacterized protein LOC105122890 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067LBR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26953 PE=4 SV=1
Gene Ontology
ID GO:0016491
description nuclear snf4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14102: 52250-55347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158845_050 0.0 - - PREDICTED: uncharacterized protein LOC105122890 [Populus euphratica]
2 Hb_000028_110 0.0842542324 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
3 Hb_000613_110 0.1118470362 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
4 Hb_002304_080 0.116099532 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
5 Hb_000608_380 0.120920669 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005731_160 0.1210118283 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_006538_120 0.1210487032 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
8 Hb_003813_020 0.1222814833 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
9 Hb_002685_060 0.1227247375 - - 30S ribosomal protein S5, putative [Ricinus communis]
10 Hb_005276_010 0.1235824106 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
11 Hb_007054_070 0.1241539556 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
12 Hb_009767_130 0.1263450605 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
13 Hb_093458_060 0.1273149756 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
14 Hb_005127_030 0.1289469134 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_000648_040 0.1292271509 - - unknown [Populus trichocarpa]
16 Hb_000107_570 0.1297482011 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
17 Hb_001449_070 0.1301194617 - - conserved hypothetical protein [Ricinus communis]
18 Hb_055619_010 0.1308267255 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
19 Hb_000164_140 0.1321622641 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_016461_030 0.1341302322 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_158845_050 Hb_158845_050 Hb_000028_110 Hb_000028_110 Hb_158845_050--Hb_000028_110 Hb_000613_110 Hb_000613_110 Hb_158845_050--Hb_000613_110 Hb_002304_080 Hb_002304_080 Hb_158845_050--Hb_002304_080 Hb_000608_380 Hb_000608_380 Hb_158845_050--Hb_000608_380 Hb_005731_160 Hb_005731_160 Hb_158845_050--Hb_005731_160 Hb_006538_120 Hb_006538_120 Hb_158845_050--Hb_006538_120 Hb_000107_570 Hb_000107_570 Hb_000028_110--Hb_000107_570 Hb_000028_110--Hb_002304_080 Hb_000164_140 Hb_000164_140 Hb_000028_110--Hb_000164_140 Hb_000028_110--Hb_006538_120 Hb_093458_060 Hb_093458_060 Hb_000028_110--Hb_093458_060 Hb_000613_110--Hb_005731_160 Hb_002811_010 Hb_002811_010 Hb_000613_110--Hb_002811_010 Hb_032920_050 Hb_032920_050 Hb_000613_110--Hb_032920_050 Hb_001449_070 Hb_001449_070 Hb_000613_110--Hb_001449_070 Hb_003106_190 Hb_003106_190 Hb_000613_110--Hb_003106_190 Hb_003994_110 Hb_003994_110 Hb_000613_110--Hb_003994_110 Hb_005672_020 Hb_005672_020 Hb_002304_080--Hb_005672_020 Hb_029695_110 Hb_029695_110 Hb_002304_080--Hb_029695_110 Hb_002304_080--Hb_006538_120 Hb_021346_030 Hb_021346_030 Hb_002304_080--Hb_021346_030 Hb_069662_010 Hb_069662_010 Hb_000608_380--Hb_069662_010 Hb_000608_380--Hb_006538_120 Hb_000441_060 Hb_000441_060 Hb_000608_380--Hb_000441_060 Hb_005127_030 Hb_005127_030 Hb_000608_380--Hb_005127_030 Hb_000221_140 Hb_000221_140 Hb_000608_380--Hb_000221_140 Hb_001205_300 Hb_001205_300 Hb_000608_380--Hb_001205_300 Hb_005731_160--Hb_002811_010 Hb_002758_010 Hb_002758_010 Hb_005731_160--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_005731_160--Hb_000130_320 Hb_055619_010 Hb_055619_010 Hb_005731_160--Hb_055619_010 Hb_000648_040 Hb_000648_040 Hb_005731_160--Hb_000648_040 Hb_006538_120--Hb_000221_140 Hb_009775_010 Hb_009775_010 Hb_006538_120--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_006538_120--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_006538_120--Hb_005127_030 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.51557 4.29666 15.9191 10.335 7.98404 19.5405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6375 15.0077 5.56304 7.61095 42.737

CAGE analysis