Hb_002304_080

Information

Type -
Description -
Location Contig2304: 67548-71416
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20820g
description POPTRDRAFT_712227; hypothetical protein
nr
ID XP_012091719.1
description PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
swissprot
ID A7GWZ7
description N utilization substance protein B homolog OS=Campylobacter curvus (strain 525.92) GN=nusB PE=3 SV=1
trembl
ID A0A067JM20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21521 PE=4 SV=1
Gene Ontology
ID GO:0009507
description antitermination domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24212: 67559-71795 , PASA_asmbl_24213: 67559-71795
cDNA
(Sanger)
(ID:Location)		 003_I09.ab1: 67559-71094

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_080 0.0 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
2 Hb_000028_110 0.0939216861 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
3 Hb_005672_020 0.0950313513 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
4 Hb_029695_110 0.1018170651 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
5 Hb_006538_120 0.1032282046 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
6 Hb_158845_050 0.116099532 - - PREDICTED: uncharacterized protein LOC105122890 [Populus euphratica]
7 Hb_021346_030 0.1231586033 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
8 Hb_001205_300 0.1235523544 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
9 Hb_000959_030 0.1237410805 - - mitochondrial carrier protein, putative [Ricinus communis]
10 Hb_031284_070 0.1244665267 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
11 Hb_000371_100 0.1248511063 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
12 Hb_011021_020 0.1251220666 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
13 Hb_000107_570 0.1265539244 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
14 Hb_000224_160 0.1283253337 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_001410_070 0.1291740949 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
16 Hb_069662_010 0.1339718629 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
17 Hb_000221_140 0.1342842839 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_002496_020 0.1352069599 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000920_030 0.1362075043 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_001584_200 0.1387241687 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]

Gene co-expression network

sample Hb_002304_080 Hb_002304_080 Hb_000028_110 Hb_000028_110 Hb_002304_080--Hb_000028_110 Hb_005672_020 Hb_005672_020 Hb_002304_080--Hb_005672_020 Hb_029695_110 Hb_029695_110 Hb_002304_080--Hb_029695_110 Hb_006538_120 Hb_006538_120 Hb_002304_080--Hb_006538_120 Hb_158845_050 Hb_158845_050 Hb_002304_080--Hb_158845_050 Hb_021346_030 Hb_021346_030 Hb_002304_080--Hb_021346_030 Hb_000107_570 Hb_000107_570 Hb_000028_110--Hb_000107_570 Hb_000028_110--Hb_158845_050 Hb_000164_140 Hb_000164_140 Hb_000028_110--Hb_000164_140 Hb_000028_110--Hb_006538_120 Hb_093458_060 Hb_093458_060 Hb_000028_110--Hb_093458_060 Hb_000371_100 Hb_000371_100 Hb_005672_020--Hb_000371_100 Hb_001828_040 Hb_001828_040 Hb_005672_020--Hb_001828_040 Hb_001584_200 Hb_001584_200 Hb_005672_020--Hb_001584_200 Hb_005672_020--Hb_021346_030 Hb_002496_020 Hb_002496_020 Hb_005672_020--Hb_002496_020 Hb_000920_030 Hb_000920_030 Hb_029695_110--Hb_000920_030 Hb_001205_300 Hb_001205_300 Hb_029695_110--Hb_001205_300 Hb_000959_030 Hb_000959_030 Hb_029695_110--Hb_000959_030 Hb_003462_070 Hb_003462_070 Hb_029695_110--Hb_003462_070 Hb_000723_100 Hb_000723_100 Hb_029695_110--Hb_000723_100 Hb_000221_140 Hb_000221_140 Hb_006538_120--Hb_000221_140 Hb_009775_010 Hb_009775_010 Hb_006538_120--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_006538_120--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_005127_030 Hb_005127_030 Hb_006538_120--Hb_005127_030 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100 Hb_000613_110 Hb_000613_110 Hb_158845_050--Hb_000613_110 Hb_000608_380 Hb_000608_380 Hb_158845_050--Hb_000608_380 Hb_005731_160 Hb_005731_160 Hb_158845_050--Hb_005731_160 Hb_158845_050--Hb_006538_120 Hb_000948_170 Hb_000948_170 Hb_021346_030--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_021346_030--Hb_000627_250 Hb_031284_070 Hb_031284_070 Hb_021346_030--Hb_031284_070 Hb_069662_010 Hb_069662_010 Hb_021346_030--Hb_069662_010 Hb_000080_120 Hb_000080_120 Hb_021346_030--Hb_000080_120 Hb_000816_100 Hb_000816_100 Hb_021346_030--Hb_000816_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0608 5.54932 22.1046 10.6494 10.7206 22.8505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.626 12.0856 10.0785 6.09353 38.6035

CAGE analysis