Hb_005672_020

Information

Type -
Description -
Location Contig5672: 42761-45389
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15120g
description POPTRDRAFT_572955; ribosomal protein L6
nr
ID XP_012086328.1
description PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
swissprot
ID O23049
description 50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=2 SV=1
trembl
ID A0A067JPE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22866 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49167: 42750-45313 , PASA_asmbl_49168: 42778-45266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005672_020 0.0 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
2 Hb_002304_080 0.0950313513 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
3 Hb_000371_100 0.1004878514 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
4 Hb_001828_040 0.1095243571 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
5 Hb_001584_200 0.1110144296 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
6 Hb_021346_030 0.1148223348 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
7 Hb_002496_020 0.1164314661 - - DNA binding protein, putative [Ricinus communis]
8 Hb_000224_160 0.1175929767 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_000984_270 0.117975018 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000028_110 0.1194400515 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
11 Hb_000920_030 0.1234309613 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_006538_120 0.124249804 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
13 Hb_000200_030 0.1245676111 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
14 Hb_001205_300 0.1253744344 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
15 Hb_002217_260 0.1260236237 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
16 Hb_029695_110 0.1287904687 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
17 Hb_000462_090 0.1299154379 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
18 Hb_002053_110 0.1304787989 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000135_030 0.1318155468 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
20 Hb_002163_040 0.1323869163 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005672_020 Hb_005672_020 Hb_002304_080 Hb_002304_080 Hb_005672_020--Hb_002304_080 Hb_000371_100 Hb_000371_100 Hb_005672_020--Hb_000371_100 Hb_001828_040 Hb_001828_040 Hb_005672_020--Hb_001828_040 Hb_001584_200 Hb_001584_200 Hb_005672_020--Hb_001584_200 Hb_021346_030 Hb_021346_030 Hb_005672_020--Hb_021346_030 Hb_002496_020 Hb_002496_020 Hb_005672_020--Hb_002496_020 Hb_000028_110 Hb_000028_110 Hb_002304_080--Hb_000028_110 Hb_029695_110 Hb_029695_110 Hb_002304_080--Hb_029695_110 Hb_006538_120 Hb_006538_120 Hb_002304_080--Hb_006538_120 Hb_158845_050 Hb_158845_050 Hb_002304_080--Hb_158845_050 Hb_002304_080--Hb_021346_030 Hb_001504_030 Hb_001504_030 Hb_000371_100--Hb_001504_030 Hb_000371_100--Hb_001828_040 Hb_000371_100--Hb_000028_110 Hb_000371_100--Hb_002496_020 Hb_001314_080 Hb_001314_080 Hb_000371_100--Hb_001314_080 Hb_002079_030 Hb_002079_030 Hb_001828_040--Hb_002079_030 Hb_000108_050 Hb_000108_050 Hb_001828_040--Hb_000108_050 Hb_001828_040--Hb_001504_030 Hb_011486_040 Hb_011486_040 Hb_001828_040--Hb_011486_040 Hb_000224_160 Hb_000224_160 Hb_001584_200--Hb_000224_160 Hb_003376_230 Hb_003376_230 Hb_001584_200--Hb_003376_230 Hb_000462_090 Hb_000462_090 Hb_001584_200--Hb_000462_090 Hb_012022_150 Hb_012022_150 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_000172_580 Hb_000172_580 Hb_001584_200--Hb_000172_580 Hb_000948_170 Hb_000948_170 Hb_021346_030--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_021346_030--Hb_000627_250 Hb_031284_070 Hb_031284_070 Hb_021346_030--Hb_031284_070 Hb_069662_010 Hb_069662_010 Hb_021346_030--Hb_069662_010 Hb_000080_120 Hb_000080_120 Hb_021346_030--Hb_000080_120 Hb_000816_100 Hb_000816_100 Hb_021346_030--Hb_000816_100 Hb_004191_020 Hb_004191_020 Hb_002496_020--Hb_004191_020 Hb_000479_250 Hb_000479_250 Hb_002496_020--Hb_000479_250 Hb_004531_140 Hb_004531_140 Hb_002496_020--Hb_004531_140 Hb_001369_750 Hb_001369_750 Hb_002496_020--Hb_001369_750 Hb_005405_020 Hb_005405_020 Hb_002496_020--Hb_005405_020 Hb_002496_020--Hb_001584_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.5518 15.5814 92.8471 59.102 51.4598 100.671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.7202 48.852 64.9268 23.692 174.312

CAGE analysis