Hb_001828_040

Information

Type -
Description -
Location Contig1828: 38234-41997
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36170g
description POPTRDRAFT_549629; hypothetical protein
nr
ID XP_012071176.1
description PREDICTED: F-box protein SKIP14 [Jatropha curcas]
swissprot
ID Q9LU91
description F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1
trembl
ID A0A067LNC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17804: 38461-41986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_040 0.0 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
2 Hb_002079_030 0.0823782195 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
3 Hb_000108_050 0.099941675 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
4 Hb_001504_030 0.1061891708 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
5 Hb_005672_020 0.1095243571 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
6 Hb_000371_100 0.1170066841 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
7 Hb_011486_040 0.1177124338 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
8 Hb_000244_180 0.1218130035 - - conserved hypothetical protein [Ricinus communis]
9 Hb_174865_040 0.1236914721 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
10 Hb_024184_010 0.1247777615 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
11 Hb_001876_040 0.1253230869 - - PREDICTED: mucin-5B [Jatropha curcas]
12 Hb_000327_110 0.126293828 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
13 Hb_000071_150 0.1265197835 - - Stearoy-ACP desaturase [Ricinus communis]
14 Hb_000136_140 0.1267583096 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
15 Hb_069662_010 0.1268069276 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
16 Hb_012573_050 0.1273105562 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
17 Hb_000802_140 0.1275182337 - - hypothetical protein B456_011G045700 [Gossypium raimondii]
18 Hb_000103_530 0.1293922858 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
19 Hb_009225_020 0.1294140244 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
20 Hb_021346_030 0.1301072352 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]

Gene co-expression network

sample Hb_001828_040 Hb_001828_040 Hb_002079_030 Hb_002079_030 Hb_001828_040--Hb_002079_030 Hb_000108_050 Hb_000108_050 Hb_001828_040--Hb_000108_050 Hb_001504_030 Hb_001504_030 Hb_001828_040--Hb_001504_030 Hb_005672_020 Hb_005672_020 Hb_001828_040--Hb_005672_020 Hb_000371_100 Hb_000371_100 Hb_001828_040--Hb_000371_100 Hb_011486_040 Hb_011486_040 Hb_001828_040--Hb_011486_040 Hb_069662_010 Hb_069662_010 Hb_002079_030--Hb_069662_010 Hb_142328_010 Hb_142328_010 Hb_002079_030--Hb_142328_010 Hb_002079_030--Hb_011486_040 Hb_000333_080 Hb_000333_080 Hb_002079_030--Hb_000333_080 Hb_004531_140 Hb_004531_140 Hb_002079_030--Hb_004531_140 Hb_000445_140 Hb_000445_140 Hb_000108_050--Hb_000445_140 Hb_002150_140 Hb_002150_140 Hb_000108_050--Hb_002150_140 Hb_156850_100 Hb_156850_100 Hb_000108_050--Hb_156850_100 Hb_001014_100 Hb_001014_100 Hb_000108_050--Hb_001014_100 Hb_000244_180 Hb_000244_180 Hb_000108_050--Hb_000244_180 Hb_048093_010 Hb_048093_010 Hb_001504_030--Hb_048093_010 Hb_000189_480 Hb_000189_480 Hb_001504_030--Hb_000189_480 Hb_133702_010 Hb_133702_010 Hb_001504_030--Hb_133702_010 Hb_001314_080 Hb_001314_080 Hb_001504_030--Hb_001314_080 Hb_000721_030 Hb_000721_030 Hb_001504_030--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_001504_030--Hb_001102_020 Hb_002304_080 Hb_002304_080 Hb_005672_020--Hb_002304_080 Hb_005672_020--Hb_000371_100 Hb_001584_200 Hb_001584_200 Hb_005672_020--Hb_001584_200 Hb_021346_030 Hb_021346_030 Hb_005672_020--Hb_021346_030 Hb_002496_020 Hb_002496_020 Hb_005672_020--Hb_002496_020 Hb_000371_100--Hb_001504_030 Hb_000028_110 Hb_000028_110 Hb_000371_100--Hb_000028_110 Hb_000371_100--Hb_002496_020 Hb_000371_100--Hb_001314_080 Hb_011486_040--Hb_004531_140 Hb_152202_010 Hb_152202_010 Hb_011486_040--Hb_152202_010 Hb_001898_210 Hb_001898_210 Hb_011486_040--Hb_001898_210 Hb_001640_030 Hb_001640_030 Hb_011486_040--Hb_001640_030 Hb_011486_040--Hb_002496_020 Hb_000370_020 Hb_000370_020 Hb_011486_040--Hb_000370_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9947 5.82943 16.9148 17.0906 6.64958 18.0401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.5766 6.54227 10.4617 4.78079 25.4628

CAGE analysis