Hb_000108_050

Information

Type -
Description -
Location Contig108: 42337-47195
Sequence    

Annotation

kegg
ID tcc:TCM_039990
description Mitochondrial substrate carrier family protein
nr
ID XP_012067077.1
description PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
swissprot
ID Q9C5M0
description Mitochondrial dicarboxylate/tricarboxylate transporter DTC OS=Arabidopsis thaliana GN=DTC PE=1 SV=1
trembl
ID A0A067LC67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01873 PE=3 SV=1
Gene Ontology
ID GO:0005618
description mitochondrial dicarboxylate tricarboxylate transporter dtc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02378: 42372-47155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_050 0.0 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
2 Hb_000445_140 0.0908135624 - - hypothetical protein RCOM_0561550 [Ricinus communis]
3 Hb_002150_140 0.0929741685 - - PREDICTED: girdin-like [Jatropha curcas]
4 Hb_156850_100 0.0963001874 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
5 Hb_001828_040 0.099941675 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
6 Hb_001014_100 0.100550466 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
7 Hb_000244_180 0.101922312 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003728_100 0.1045073463 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
9 Hb_002498_140 0.1047133073 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
10 Hb_002874_180 0.105492607 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
11 Hb_021650_010 0.1065716828 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
12 Hb_012305_100 0.1073920469 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
13 Hb_171554_010 0.1085580412 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
14 Hb_001022_030 0.1104390888 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
15 Hb_009225_020 0.1108284321 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
16 Hb_001504_030 0.1114571616 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
17 Hb_000802_130 0.1116721953 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
18 Hb_004109_120 0.1120023358 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
19 Hb_001619_050 0.1121789383 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
20 Hb_000207_300 0.1128909731 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000108_050 Hb_000108_050 Hb_000445_140 Hb_000445_140 Hb_000108_050--Hb_000445_140 Hb_002150_140 Hb_002150_140 Hb_000108_050--Hb_002150_140 Hb_156850_100 Hb_156850_100 Hb_000108_050--Hb_156850_100 Hb_001828_040 Hb_001828_040 Hb_000108_050--Hb_001828_040 Hb_001014_100 Hb_001014_100 Hb_000108_050--Hb_001014_100 Hb_000244_180 Hb_000244_180 Hb_000108_050--Hb_000244_180 Hb_001619_050 Hb_001619_050 Hb_000445_140--Hb_001619_050 Hb_000445_140--Hb_001014_100 Hb_005496_050 Hb_005496_050 Hb_000445_140--Hb_005496_050 Hb_017151_010 Hb_017151_010 Hb_000445_140--Hb_017151_010 Hb_025557_050 Hb_025557_050 Hb_000445_140--Hb_025557_050 Hb_002870_020 Hb_002870_020 Hb_000445_140--Hb_002870_020 Hb_000555_020 Hb_000555_020 Hb_002150_140--Hb_000555_020 Hb_114310_070 Hb_114310_070 Hb_002150_140--Hb_114310_070 Hb_002150_140--Hb_005496_050 Hb_087313_010 Hb_087313_010 Hb_002150_140--Hb_087313_010 Hb_001438_010 Hb_001438_010 Hb_002150_140--Hb_001438_010 Hb_021650_010 Hb_021650_010 Hb_002150_140--Hb_021650_010 Hb_160271_010 Hb_160271_010 Hb_156850_100--Hb_160271_010 Hb_048093_010 Hb_048093_010 Hb_156850_100--Hb_048093_010 Hb_174865_040 Hb_174865_040 Hb_156850_100--Hb_174865_040 Hb_002631_240 Hb_002631_240 Hb_156850_100--Hb_002631_240 Hb_012573_050 Hb_012573_050 Hb_156850_100--Hb_012573_050 Hb_001882_010 Hb_001882_010 Hb_156850_100--Hb_001882_010 Hb_002079_030 Hb_002079_030 Hb_001828_040--Hb_002079_030 Hb_001504_030 Hb_001504_030 Hb_001828_040--Hb_001504_030 Hb_005672_020 Hb_005672_020 Hb_001828_040--Hb_005672_020 Hb_000371_100 Hb_000371_100 Hb_001828_040--Hb_000371_100 Hb_011486_040 Hb_011486_040 Hb_001828_040--Hb_011486_040 Hb_001014_100--Hb_005496_050 Hb_000261_050 Hb_000261_050 Hb_001014_100--Hb_000261_050 Hb_001014_100--Hb_001619_050 Hb_132840_110 Hb_132840_110 Hb_001014_100--Hb_132840_110 Hb_002811_270 Hb_002811_270 Hb_001014_100--Hb_002811_270 Hb_000244_180--Hb_012573_050 Hb_004754_050 Hb_004754_050 Hb_000244_180--Hb_004754_050 Hb_171215_010 Hb_171215_010 Hb_000244_180--Hb_171215_010 Hb_007975_060 Hb_007975_060 Hb_000244_180--Hb_007975_060 Hb_000721_030 Hb_000721_030 Hb_000244_180--Hb_000721_030 Hb_001876_040 Hb_001876_040 Hb_000244_180--Hb_001876_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.6803 25.005 111.879 73.164 36.2321 53.0171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.1296 30.1537 48.1385 27.5417 102.595

CAGE analysis