Hb_174865_040

Information

Type -
Description -
Location Contig174865: 37477-41590
Sequence    

Annotation

kegg
ID rcu:RCOM_0482860
description hypothetical protein
nr
ID XP_012068051.1
description PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9GSB0
description Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1
trembl
ID A0A067KZ64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15908 PE=4 SV=1
Gene Ontology
ID GO:0009536
description crt homolog 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16644: 37494-41673
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174865_040 0.0 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
2 Hb_156850_100 0.0797215712 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
3 Hb_042083_040 0.0802423611 - - conserved hypothetical protein [Ricinus communis]
4 Hb_160271_010 0.0891003027 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
5 Hb_022693_130 0.0909195733 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_073973_120 0.091448851 - - zinc finger protein, putative [Ricinus communis]
7 Hb_000388_150 0.0920813581 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
8 Hb_077549_010 0.0957789013 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
9 Hb_000327_110 0.0973530266 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
10 Hb_048093_010 0.0978102157 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
11 Hb_006006_060 0.0983909504 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
12 Hb_000368_090 0.1003956756 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
13 Hb_000941_100 0.1042738428 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
14 Hb_000200_350 0.1051492524 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
15 Hb_024184_010 0.1063491061 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
16 Hb_000108_020 0.1065743833 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
17 Hb_012573_050 0.1075344046 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
18 Hb_000291_180 0.108285283 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
19 Hb_000140_340 0.1087159803 - - PREDICTED: protein ABIL1 [Jatropha curcas]
20 Hb_011926_040 0.1087939103 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_174865_040 Hb_174865_040 Hb_156850_100 Hb_156850_100 Hb_174865_040--Hb_156850_100 Hb_042083_040 Hb_042083_040 Hb_174865_040--Hb_042083_040 Hb_160271_010 Hb_160271_010 Hb_174865_040--Hb_160271_010 Hb_022693_130 Hb_022693_130 Hb_174865_040--Hb_022693_130 Hb_073973_120 Hb_073973_120 Hb_174865_040--Hb_073973_120 Hb_000388_150 Hb_000388_150 Hb_174865_040--Hb_000388_150 Hb_156850_100--Hb_160271_010 Hb_048093_010 Hb_048093_010 Hb_156850_100--Hb_048093_010 Hb_002631_240 Hb_002631_240 Hb_156850_100--Hb_002631_240 Hb_012573_050 Hb_012573_050 Hb_156850_100--Hb_012573_050 Hb_001882_010 Hb_001882_010 Hb_156850_100--Hb_001882_010 Hb_001976_030 Hb_001976_030 Hb_042083_040--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_042083_040--Hb_001628_120 Hb_042083_040--Hb_156850_100 Hb_000049_180 Hb_000049_180 Hb_042083_040--Hb_000049_180 Hb_000096_190 Hb_000096_190 Hb_042083_040--Hb_000096_190 Hb_160271_010--Hb_022693_130 Hb_000291_180 Hb_000291_180 Hb_160271_010--Hb_000291_180 Hb_000320_190 Hb_000320_190 Hb_160271_010--Hb_000320_190 Hb_002107_050 Hb_002107_050 Hb_160271_010--Hb_002107_050 Hb_000108_020 Hb_000108_020 Hb_160271_010--Hb_000108_020 Hb_005062_060 Hb_005062_060 Hb_022693_130--Hb_005062_060 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_022693_130--Hb_000108_020 Hb_000107_250 Hb_000107_250 Hb_022693_130--Hb_000107_250 Hb_073973_120--Hb_000107_250 Hb_073973_120--Hb_022693_130 Hb_002053_050 Hb_002053_050 Hb_073973_120--Hb_002053_050 Hb_006006_060 Hb_006006_060 Hb_073973_120--Hb_006006_060 Hb_073973_120--Hb_005062_060 Hb_000480_040 Hb_000480_040 Hb_000388_150--Hb_000480_040 Hb_000388_150--Hb_006006_060 Hb_010344_030 Hb_010344_030 Hb_000388_150--Hb_010344_030 Hb_000388_150--Hb_022693_130 Hb_000388_150--Hb_005062_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06346 1.91856 6.67045 7.35315 2.36766 3.7055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43455 3.03699 2.25327 1.61852 9.3486

CAGE analysis