Hb_073973_120

Information

Type -
Description -
Location Contig73973: 100490-101494
Sequence    

Annotation

kegg
ID rcu:RCOM_1031870
description zinc finger protein, putative
nr
ID XP_002513785.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9RJ66
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1031870 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56334: 101227-102397 , PASA_asmbl_56335: 101227-102399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_120 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000107_250 0.0805621509 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
3 Hb_174865_040 0.091448851 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
4 Hb_022693_130 0.0931173766 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_002053_050 0.0953653133 - - Kinesin heavy chain, putative [Ricinus communis]
6 Hb_006006_060 0.1049427311 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
7 Hb_005062_060 0.1135143502 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
8 Hb_000140_340 0.1137303244 - - PREDICTED: protein ABIL1 [Jatropha curcas]
9 Hb_000336_200 0.113841065 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_160271_010 0.1147311883 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
11 Hb_004306_110 0.1153516724 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
12 Hb_000200_350 0.1168940842 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
13 Hb_000465_440 0.1174665929 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
14 Hb_042083_040 0.1204515069 - - conserved hypothetical protein [Ricinus communis]
15 Hb_077549_010 0.1210667336 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
16 Hb_000390_190 0.1211762462 - - ATP binding protein, putative [Ricinus communis]
17 Hb_010620_050 0.1212677585 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
18 Hb_002107_050 0.1226757837 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
19 Hb_000665_270 0.1231457674 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
20 Hb_000000_310 0.1245680755 - - metalloendopeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_073973_120 Hb_073973_120 Hb_000107_250 Hb_000107_250 Hb_073973_120--Hb_000107_250 Hb_174865_040 Hb_174865_040 Hb_073973_120--Hb_174865_040 Hb_022693_130 Hb_022693_130 Hb_073973_120--Hb_022693_130 Hb_002053_050 Hb_002053_050 Hb_073973_120--Hb_002053_050 Hb_006006_060 Hb_006006_060 Hb_073973_120--Hb_006006_060 Hb_005062_060 Hb_005062_060 Hb_073973_120--Hb_005062_060 Hb_000000_310 Hb_000000_310 Hb_000107_250--Hb_000000_310 Hb_000107_250--Hb_022693_130 Hb_000107_250--Hb_002053_050 Hb_003682_070 Hb_003682_070 Hb_000107_250--Hb_003682_070 Hb_004705_160 Hb_004705_160 Hb_000107_250--Hb_004705_160 Hb_156850_100 Hb_156850_100 Hb_174865_040--Hb_156850_100 Hb_042083_040 Hb_042083_040 Hb_174865_040--Hb_042083_040 Hb_160271_010 Hb_160271_010 Hb_174865_040--Hb_160271_010 Hb_174865_040--Hb_022693_130 Hb_000388_150 Hb_000388_150 Hb_174865_040--Hb_000388_150 Hb_022693_130--Hb_160271_010 Hb_022693_130--Hb_005062_060 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_000108_020 Hb_000108_020 Hb_022693_130--Hb_000108_020 Hb_002053_050--Hb_005062_060 Hb_005656_070 Hb_005656_070 Hb_002053_050--Hb_005656_070 Hb_002053_050--Hb_022693_130 Hb_000815_230 Hb_000815_230 Hb_002053_050--Hb_000815_230 Hb_000200_350 Hb_000200_350 Hb_006006_060--Hb_000200_350 Hb_006006_060--Hb_022693_130 Hb_006006_060--Hb_000388_150 Hb_010344_030 Hb_010344_030 Hb_006006_060--Hb_010344_030 Hb_011926_040 Hb_011926_040 Hb_006006_060--Hb_011926_040 Hb_010984_020 Hb_010984_020 Hb_006006_060--Hb_010984_020 Hb_005062_060--Hb_160271_010 Hb_005062_060--Hb_005656_070 Hb_005062_060--Hb_000107_250 Hb_000453_030 Hb_000453_030 Hb_005062_060--Hb_000453_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.533337 0.679066 1.7849 2.29563 0.637201 0.85315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.352538 0.712982 0.291727 0.414106 2.51291

CAGE analysis