Hb_000815_230

Information

Type -
Description -
Location Contig815: 257716-259164
Sequence    

Annotation

kegg
ID rcu:RCOM_0837590
description hypothetical protein
nr
ID XP_002522472.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P9WLW6
description Uncharacterized protein MT1551 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1551 PE=4 SV=1
trembl
ID B9S903
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0837590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59365: 257316-259191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000505_080 0.0945472472 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
3 Hb_002053_050 0.0950335261 - - Kinesin heavy chain, putative [Ricinus communis]
4 Hb_003682_070 0.1001257405 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
5 Hb_000000_310 0.1056636706 - - metalloendopeptidase, putative [Ricinus communis]
6 Hb_010344_030 0.107469355 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004735_020 0.1077707259 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
8 Hb_000107_250 0.1093007638 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
9 Hb_003053_050 0.1129403349 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
10 Hb_000922_060 0.1180575127 - - kinesin light chain, putative [Ricinus communis]
11 Hb_130589_010 0.1189568975 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
12 Hb_000062_400 0.1196417143 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006006_060 0.1201122419 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
14 Hb_006916_030 0.1210333594 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
15 Hb_001396_240 0.1224372286 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
16 Hb_002097_100 0.1252531647 - - protein with unknown function [Ricinus communis]
17 Hb_163145_030 0.1265102472 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
18 Hb_003462_060 0.1265846652 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
19 Hb_005062_060 0.1285077455 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
20 Hb_000172_350 0.1285982282 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]

Gene co-expression network

sample Hb_000815_230 Hb_000815_230 Hb_000505_080 Hb_000505_080 Hb_000815_230--Hb_000505_080 Hb_002053_050 Hb_002053_050 Hb_000815_230--Hb_002053_050 Hb_003682_070 Hb_003682_070 Hb_000815_230--Hb_003682_070 Hb_000000_310 Hb_000000_310 Hb_000815_230--Hb_000000_310 Hb_010344_030 Hb_010344_030 Hb_000815_230--Hb_010344_030 Hb_004735_020 Hb_004735_020 Hb_000815_230--Hb_004735_020 Hb_002471_110 Hb_002471_110 Hb_000505_080--Hb_002471_110 Hb_001675_050 Hb_001675_050 Hb_000505_080--Hb_001675_050 Hb_000505_080--Hb_010344_030 Hb_006006_060 Hb_006006_060 Hb_000505_080--Hb_006006_060 Hb_000505_080--Hb_002053_050 Hb_005062_060 Hb_005062_060 Hb_002053_050--Hb_005062_060 Hb_000107_250 Hb_000107_250 Hb_002053_050--Hb_000107_250 Hb_005656_070 Hb_005656_070 Hb_002053_050--Hb_005656_070 Hb_022693_130 Hb_022693_130 Hb_002053_050--Hb_022693_130 Hb_073973_120 Hb_073973_120 Hb_002053_050--Hb_073973_120 Hb_003682_070--Hb_000000_310 Hb_000922_060 Hb_000922_060 Hb_003682_070--Hb_000922_060 Hb_000300_510 Hb_000300_510 Hb_003682_070--Hb_000300_510 Hb_003682_070--Hb_000107_250 Hb_000120_860 Hb_000120_860 Hb_003682_070--Hb_000120_860 Hb_003682_070--Hb_004735_020 Hb_000000_310--Hb_000107_250 Hb_000000_310--Hb_000300_510 Hb_000684_390 Hb_000684_390 Hb_000000_310--Hb_000684_390 Hb_000000_310--Hb_000120_860 Hb_000000_310--Hb_000922_060 Hb_010344_030--Hb_006006_060 Hb_005250_010 Hb_005250_010 Hb_010344_030--Hb_005250_010 Hb_000200_350 Hb_000200_350 Hb_010344_030--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_010344_030--Hb_000388_150 Hb_010344_030--Hb_004735_020 Hb_003462_060 Hb_003462_060 Hb_010344_030--Hb_003462_060 Hb_001009_260 Hb_001009_260 Hb_004735_020--Hb_001009_260 Hb_004735_020--Hb_000120_860 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_130589_010 Hb_130589_010 Hb_004735_020--Hb_130589_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51993 1.64555 3.1647 4.72804 1.14038 2.17342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.585022 0.383536 1.1034 1.1028 6.73001

CAGE analysis