Hb_002471_110

Information

Type -
Description -
Location Contig2471: 91225-94041
Sequence    

Annotation

kegg
ID rcu:RCOM_1150010
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative (EC:2.4.1.207)
nr
ID XP_012072371.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
swissprot
ID Q38909
description Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1
trembl
ID A0A067KT85
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_04811 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25646: 74684-123560 , PASA_asmbl_25648: 91764-92546 , PASA_asmbl_25652: 90987-94025
cDNA
(Sanger)
(ID:Location)		 005_G05.ab1: 81340-123560 , 028_J21.ab1: 81419-123560 , 036_F09.ab1: 81311-123560

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_110 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
2 Hb_003462_060 0.1067147956 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
3 Hb_000505_080 0.1290034009 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
4 Hb_000029_110 0.1315553384 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001541_100 0.1344405152 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
6 Hb_012098_150 0.1366351963 - - ARC5 protein [Manihot esculenta]
7 Hb_000703_290 0.1399996548 - - aldo/keto reductase, putative [Ricinus communis]
8 Hb_022693_130 0.1409598071 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_002053_050 0.1419844473 - - Kinesin heavy chain, putative [Ricinus communis]
10 Hb_000300_090 0.1434798676 - - catalytic, putative [Ricinus communis]
11 Hb_001519_040 0.1462202176 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
12 Hb_000645_180 0.1471752182 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
13 Hb_000820_150 0.1474183964 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
14 Hb_000664_020 0.1482159372 - - tryptophanyl-tRNA synthetase, putative [Ricinus communis]
15 Hb_008494_030 0.1486491662 - - catalytic, putative [Ricinus communis]
16 Hb_000291_180 0.1489346966 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
17 Hb_001396_240 0.1499910415 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
18 Hb_010344_030 0.1506431217 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005656_070 0.1515312984 - - PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_000320_190 0.1516589331 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002471_110 Hb_002471_110 Hb_003462_060 Hb_003462_060 Hb_002471_110--Hb_003462_060 Hb_000505_080 Hb_000505_080 Hb_002471_110--Hb_000505_080 Hb_000029_110 Hb_000029_110 Hb_002471_110--Hb_000029_110 Hb_001541_100 Hb_001541_100 Hb_002471_110--Hb_001541_100 Hb_012098_150 Hb_012098_150 Hb_002471_110--Hb_012098_150 Hb_000703_290 Hb_000703_290 Hb_002471_110--Hb_000703_290 Hb_000482_050 Hb_000482_050 Hb_003462_060--Hb_000482_050 Hb_000260_710 Hb_000260_710 Hb_003462_060--Hb_000260_710 Hb_002600_070 Hb_002600_070 Hb_003462_060--Hb_002600_070 Hb_022693_130 Hb_022693_130 Hb_003462_060--Hb_022693_130 Hb_001396_240 Hb_001396_240 Hb_003462_060--Hb_001396_240 Hb_000529_130 Hb_000529_130 Hb_003462_060--Hb_000529_130 Hb_000815_230 Hb_000815_230 Hb_000505_080--Hb_000815_230 Hb_001675_050 Hb_001675_050 Hb_000505_080--Hb_001675_050 Hb_010344_030 Hb_010344_030 Hb_000505_080--Hb_010344_030 Hb_006006_060 Hb_006006_060 Hb_000505_080--Hb_006006_060 Hb_002053_050 Hb_002053_050 Hb_000505_080--Hb_002053_050 Hb_000029_110--Hb_001541_100 Hb_000108_020 Hb_000108_020 Hb_000029_110--Hb_000108_020 Hb_000029_110--Hb_006006_060 Hb_000309_020 Hb_000309_020 Hb_000029_110--Hb_000309_020 Hb_000480_040 Hb_000480_040 Hb_000029_110--Hb_000480_040 Hb_000116_190 Hb_000116_190 Hb_000029_110--Hb_000116_190 Hb_001541_100--Hb_012098_150 Hb_001959_240 Hb_001959_240 Hb_001541_100--Hb_001959_240 Hb_002871_140 Hb_002871_140 Hb_001541_100--Hb_002871_140 Hb_003398_100 Hb_003398_100 Hb_001541_100--Hb_003398_100 Hb_065525_130 Hb_065525_130 Hb_012098_150--Hb_065525_130 Hb_000071_150 Hb_000071_150 Hb_012098_150--Hb_000071_150 Hb_000445_140 Hb_000445_140 Hb_012098_150--Hb_000445_140 Hb_006570_010 Hb_006570_010 Hb_012098_150--Hb_006570_010 Hb_012098_150--Hb_003398_100 Hb_001348_190 Hb_001348_190 Hb_000703_290--Hb_001348_190 Hb_003752_070 Hb_003752_070 Hb_000703_290--Hb_003752_070 Hb_001623_490 Hb_001623_490 Hb_000703_290--Hb_001623_490 Hb_000663_020 Hb_000663_020 Hb_000703_290--Hb_000663_020 Hb_000291_180 Hb_000291_180 Hb_000703_290--Hb_000291_180 Hb_002218_020 Hb_002218_020 Hb_000703_290--Hb_002218_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
182.922 118.17 319.225 284.911 76.4154 197.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
118.937 33.1635 31.0443 74.4967 360.909

CAGE analysis