Hb_001541_100

Information

Type -
Description -
Location Contig1541: 95629-102796
Sequence    

Annotation

kegg
ID rcu:RCOM_0794100
description alpha-galactosidase/alpha-n-acetylgalactosaminidase, putative (EC:3.2.1.22)
nr
ID XP_012085518.1
description PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
swissprot
ID Q9URZ0
description Alpha-galactosidase mel1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mel1 PE=3 SV=1
trembl
ID A0A067JS15
description Alpha-galactosidase OS=Jatropha curcas GN=JCGZ_17840 PE=3 SV=1
Gene Ontology
ID GO:0052692
description alpha-galactosidase alpha-n-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13279: 100315-101274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_100 0.0 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
2 Hb_000029_110 0.0936480493 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012098_150 0.1113076737 - - ARC5 protein [Manihot esculenta]
4 Hb_002471_110 0.1344405152 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
5 Hb_001959_240 0.1357895181 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_002871_140 0.1394779006 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
7 Hb_003398_100 0.1402282204 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000441_060 0.143465473 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
9 Hb_002105_010 0.1447541594 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003462_070 0.1448007624 - - arsenical pump-driving atpase, putative [Ricinus communis]
11 Hb_000645_070 0.1452294685 - - aldehyde dehydrogenase, putative [Ricinus communis]
12 Hb_031042_060 0.1458065544 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_000703_290 0.1465569978 - - aldo/keto reductase, putative [Ricinus communis]
14 Hb_009524_030 0.1492282296 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
15 Hb_000920_030 0.1499032374 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_065525_130 0.1500971069 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_002749_080 0.1502027063 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004724_460 0.1506277774 - - hypothetical protein EUGRSUZ_L02100 [Eucalyptus grandis]
19 Hb_003462_060 0.150751368 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
20 Hb_006816_190 0.1513369914 - - calreticulin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001541_100 Hb_001541_100 Hb_000029_110 Hb_000029_110 Hb_001541_100--Hb_000029_110 Hb_012098_150 Hb_012098_150 Hb_001541_100--Hb_012098_150 Hb_002471_110 Hb_002471_110 Hb_001541_100--Hb_002471_110 Hb_001959_240 Hb_001959_240 Hb_001541_100--Hb_001959_240 Hb_002871_140 Hb_002871_140 Hb_001541_100--Hb_002871_140 Hb_003398_100 Hb_003398_100 Hb_001541_100--Hb_003398_100 Hb_000108_020 Hb_000108_020 Hb_000029_110--Hb_000108_020 Hb_006006_060 Hb_006006_060 Hb_000029_110--Hb_006006_060 Hb_000309_020 Hb_000309_020 Hb_000029_110--Hb_000309_020 Hb_000480_040 Hb_000480_040 Hb_000029_110--Hb_000480_040 Hb_000116_190 Hb_000116_190 Hb_000029_110--Hb_000116_190 Hb_065525_130 Hb_065525_130 Hb_012098_150--Hb_065525_130 Hb_000071_150 Hb_000071_150 Hb_012098_150--Hb_000071_150 Hb_000445_140 Hb_000445_140 Hb_012098_150--Hb_000445_140 Hb_006570_010 Hb_006570_010 Hb_012098_150--Hb_006570_010 Hb_012098_150--Hb_003398_100 Hb_003462_060 Hb_003462_060 Hb_002471_110--Hb_003462_060 Hb_000505_080 Hb_000505_080 Hb_002471_110--Hb_000505_080 Hb_002471_110--Hb_000029_110 Hb_002471_110--Hb_012098_150 Hb_000703_290 Hb_000703_290 Hb_002471_110--Hb_000703_290 Hb_015531_030 Hb_015531_030 Hb_001959_240--Hb_015531_030 Hb_006911_070 Hb_006911_070 Hb_001959_240--Hb_006911_070 Hb_031042_060 Hb_031042_060 Hb_001959_240--Hb_031042_060 Hb_006618_070 Hb_006618_070 Hb_001959_240--Hb_006618_070 Hb_001454_150 Hb_001454_150 Hb_001959_240--Hb_001454_150 Hb_002498_170 Hb_002498_170 Hb_001959_240--Hb_002498_170 Hb_000903_010 Hb_000903_010 Hb_002871_140--Hb_000903_010 Hb_000154_050 Hb_000154_050 Hb_002871_140--Hb_000154_050 Hb_002749_080 Hb_002749_080 Hb_002871_140--Hb_002749_080 Hb_005064_010 Hb_005064_010 Hb_002871_140--Hb_005064_010 Hb_002837_040 Hb_002837_040 Hb_002871_140--Hb_002837_040 Hb_033642_040 Hb_033642_040 Hb_002871_140--Hb_033642_040 Hb_000820_150 Hb_000820_150 Hb_003398_100--Hb_000820_150 Hb_003398_100--Hb_033642_040 Hb_003104_040 Hb_003104_040 Hb_003398_100--Hb_003104_040 Hb_001789_020 Hb_001789_020 Hb_003398_100--Hb_001789_020 Hb_002784_030 Hb_002784_030 Hb_003398_100--Hb_002784_030 Hb_073973_150 Hb_073973_150 Hb_003398_100--Hb_073973_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.841164 0.234367 1.49324 0.944505 0.744756 0.742293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.437245 0.215008 0.0811288 0.488461 1.53632

CAGE analysis