Hb_000071_150

Information

Type -
Description -
Location Contig71: 170978-176620
Sequence    

Annotation

kegg
ID rcu:RCOM_1238330
description Stearoy-ACP desaturase (EC:1.14.19.2)
nr
ID XP_002531889.1
description Stearoy-ACP desaturase [Ricinus communis]
swissprot
ID P22337
description Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1
trembl
ID B9T0X0
description Acyl-[acyl-carrier-protein] desaturase OS=Ricinus communis GN=RCOM_1238330 PE=3 SV=1
Gene Ontology
ID GO:0009507
description acyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55190: 170720-176547 , PASA_asmbl_55191: 172171-172276 , PASA_asmbl_55193: 171797-171969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_150 0.0 - - Stearoy-ACP desaturase [Ricinus communis]
2 Hb_171334_010 0.0690956306 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
3 Hb_005895_010 0.0979836493 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
4 Hb_002871_140 0.0998935907 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
5 Hb_000072_090 0.1006456065 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
6 Hb_012098_150 0.1042374817 - - ARC5 protein [Manihot esculenta]
7 Hb_000056_130 0.1067929879 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
8 Hb_000347_040 0.1070150389 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
9 Hb_008014_040 0.1096813275 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
10 Hb_000820_150 0.1107576302 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
11 Hb_000069_570 0.112202226 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
12 Hb_000362_170 0.1145008479 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
13 Hb_013726_080 0.114749215 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
14 Hb_134429_010 0.1159758132 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002079_030 0.1160516868 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
16 Hb_001002_060 0.1172069328 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
17 Hb_000494_080 0.1174508853 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
18 Hb_008511_020 0.1177853767 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
19 Hb_006810_030 0.1178755178 - - Uncharacterized protein isoform 1 [Theobroma cacao]
20 Hb_000154_050 0.118079929 - - CMP-sialic acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000071_150 Hb_000071_150 Hb_171334_010 Hb_171334_010 Hb_000071_150--Hb_171334_010 Hb_005895_010 Hb_005895_010 Hb_000071_150--Hb_005895_010 Hb_002871_140 Hb_002871_140 Hb_000071_150--Hb_002871_140 Hb_000072_090 Hb_000072_090 Hb_000071_150--Hb_000072_090 Hb_012098_150 Hb_012098_150 Hb_000071_150--Hb_012098_150 Hb_000056_130 Hb_000056_130 Hb_000071_150--Hb_000056_130 Hb_002539_110 Hb_002539_110 Hb_171334_010--Hb_002539_110 Hb_171334_010--Hb_005895_010 Hb_162275_040 Hb_162275_040 Hb_171334_010--Hb_162275_040 Hb_000362_170 Hb_000362_170 Hb_171334_010--Hb_000362_170 Hb_013726_080 Hb_013726_080 Hb_171334_010--Hb_013726_080 Hb_005895_010--Hb_000362_170 Hb_005895_010--Hb_002539_110 Hb_007800_020 Hb_007800_020 Hb_005895_010--Hb_007800_020 Hb_002014_040 Hb_002014_040 Hb_005895_010--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_005895_010--Hb_001002_060 Hb_000640_070 Hb_000640_070 Hb_005895_010--Hb_000640_070 Hb_000903_010 Hb_000903_010 Hb_002871_140--Hb_000903_010 Hb_000154_050 Hb_000154_050 Hb_002871_140--Hb_000154_050 Hb_002749_080 Hb_002749_080 Hb_002871_140--Hb_002749_080 Hb_005064_010 Hb_005064_010 Hb_002871_140--Hb_005064_010 Hb_002837_040 Hb_002837_040 Hb_002871_140--Hb_002837_040 Hb_033642_040 Hb_033642_040 Hb_002871_140--Hb_033642_040 Hb_006816_090 Hb_006816_090 Hb_000072_090--Hb_006816_090 Hb_000136_110 Hb_000136_110 Hb_000072_090--Hb_000136_110 Hb_000072_090--Hb_171334_010 Hb_001472_060 Hb_001472_060 Hb_000072_090--Hb_001472_060 Hb_001014_100 Hb_001014_100 Hb_000072_090--Hb_001014_100 Hb_065525_130 Hb_065525_130 Hb_012098_150--Hb_065525_130 Hb_001541_100 Hb_001541_100 Hb_012098_150--Hb_001541_100 Hb_000445_140 Hb_000445_140 Hb_012098_150--Hb_000445_140 Hb_006570_010 Hb_006570_010 Hb_012098_150--Hb_006570_010 Hb_003398_100 Hb_003398_100 Hb_012098_150--Hb_003398_100 Hb_002226_080 Hb_002226_080 Hb_000056_130--Hb_002226_080 Hb_008511_020 Hb_008511_020 Hb_000056_130--Hb_008511_020 Hb_009569_040 Hb_009569_040 Hb_000056_130--Hb_009569_040 Hb_002928_090 Hb_002928_090 Hb_000056_130--Hb_002928_090 Hb_001157_230 Hb_001157_230 Hb_000056_130--Hb_001157_230 Hb_006810_030 Hb_006810_030 Hb_000056_130--Hb_006810_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.571 26.4531 69.6612 71.9379 38.1666 63.4417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7713 12.0654 26.0439 24.8283 61.0903

CAGE analysis