Hb_000072_090

Information

Type -
Description -
Location Contig72: 182893-189833
Sequence    

Annotation

kegg
ID rcu:RCOM_1146630
description SEC14 cytosolic factor, putative
nr
ID XP_012074810.1
description PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
swissprot
ID Q92503
description SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2
trembl
ID B9SWQ7
description SEC14 cytosolic factor, putative OS=Ricinus communis GN=RCOM_1146630 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol phosphatidylcholine transfer protein sfh9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55578: 182970-189789 , PASA_asmbl_55579: 184048-184166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_090 0.0 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
2 Hb_006816_090 0.0847333382 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
3 Hb_000071_150 0.1006456065 - - Stearoy-ACP desaturase [Ricinus communis]
4 Hb_000136_110 0.102313471 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
5 Hb_171334_010 0.109002906 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
6 Hb_001472_060 0.1145053456 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
7 Hb_001014_100 0.1147206889 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
8 Hb_000494_080 0.1155145981 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
9 Hb_007904_210 0.115587703 - - PREDICTED: oxysterol-binding protein-related protein 1D [Jatropha curcas]
10 Hb_013726_080 0.1169218592 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
11 Hb_000108_050 0.1170068559 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
12 Hb_044662_060 0.1173340814 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
13 Hb_132840_110 0.1174545537 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
14 Hb_002498_140 0.1175726082 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
15 Hb_002811_270 0.1182475171 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
16 Hb_000445_140 0.1191785949 - - hypothetical protein RCOM_0561550 [Ricinus communis]
17 Hb_001087_030 0.1193105826 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
18 Hb_004096_060 0.1213315277 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
19 Hb_004032_370 0.1220559187 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
20 Hb_000661_110 0.1237191619 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_090 Hb_000072_090 Hb_006816_090 Hb_006816_090 Hb_000072_090--Hb_006816_090 Hb_000071_150 Hb_000071_150 Hb_000072_090--Hb_000071_150 Hb_000136_110 Hb_000136_110 Hb_000072_090--Hb_000136_110 Hb_171334_010 Hb_171334_010 Hb_000072_090--Hb_171334_010 Hb_001472_060 Hb_001472_060 Hb_000072_090--Hb_001472_060 Hb_001014_100 Hb_001014_100 Hb_000072_090--Hb_001014_100 Hb_006816_090--Hb_000136_110 Hb_002811_270 Hb_002811_270 Hb_006816_090--Hb_002811_270 Hb_000207_300 Hb_000207_300 Hb_006816_090--Hb_000207_300 Hb_006816_090--Hb_001472_060 Hb_000028_520 Hb_000028_520 Hb_006816_090--Hb_000028_520 Hb_000071_150--Hb_171334_010 Hb_005895_010 Hb_005895_010 Hb_000071_150--Hb_005895_010 Hb_002871_140 Hb_002871_140 Hb_000071_150--Hb_002871_140 Hb_012098_150 Hb_012098_150 Hb_000071_150--Hb_012098_150 Hb_000056_130 Hb_000056_130 Hb_000071_150--Hb_000056_130 Hb_001584_140 Hb_001584_140 Hb_000136_110--Hb_001584_140 Hb_002498_140 Hb_002498_140 Hb_000136_110--Hb_002498_140 Hb_001005_030 Hb_001005_030 Hb_000136_110--Hb_001005_030 Hb_000373_080 Hb_000373_080 Hb_000136_110--Hb_000373_080 Hb_000136_110--Hb_002811_270 Hb_001269_230 Hb_001269_230 Hb_000136_110--Hb_001269_230 Hb_002539_110 Hb_002539_110 Hb_171334_010--Hb_002539_110 Hb_171334_010--Hb_005895_010 Hb_162275_040 Hb_162275_040 Hb_171334_010--Hb_162275_040 Hb_000362_170 Hb_000362_170 Hb_171334_010--Hb_000362_170 Hb_013726_080 Hb_013726_080 Hb_171334_010--Hb_013726_080 Hb_003531_080 Hb_003531_080 Hb_001472_060--Hb_003531_080 Hb_004097_130 Hb_004097_130 Hb_001472_060--Hb_004097_130 Hb_021409_180 Hb_021409_180 Hb_001472_060--Hb_021409_180 Hb_000808_050 Hb_000808_050 Hb_001472_060--Hb_000808_050 Hb_001205_120 Hb_001205_120 Hb_001472_060--Hb_001205_120 Hb_000019_150 Hb_000019_150 Hb_001472_060--Hb_000019_150 Hb_000445_140 Hb_000445_140 Hb_001014_100--Hb_000445_140 Hb_005496_050 Hb_005496_050 Hb_001014_100--Hb_005496_050 Hb_000261_050 Hb_000261_050 Hb_001014_100--Hb_000261_050 Hb_001619_050 Hb_001619_050 Hb_001014_100--Hb_001619_050 Hb_132840_110 Hb_132840_110 Hb_001014_100--Hb_132840_110 Hb_001014_100--Hb_002811_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6306 13.1412 44.5404 39.4817 27.4218 29.8561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5672 6.55723 25.1896 15.5608 33.7797

CAGE analysis