Hb_000019_150

Information

Type -
Description -
Location Contig19: 81963-86756
Sequence    

Annotation

kegg
ID egr:104419104
description uncharacterized LOC104419104
nr
ID XP_012067346.1
description PREDICTED: uncharacterized protein LOC105630208 [Jatropha curcas]
swissprot
ID Q6KB58
description CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 OS=Pan troglodytes GN=ST3GAL2 PE=2 SV=1
trembl
ID A0A067L0A8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26870 PE=4 SV=1
Gene Ontology
ID GO:0005768
description cmp-n-acetylneuraminate-beta-galactosamide-alpha- -sialyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18878: 82046-86714 , PASA_asmbl_18879: 82662-86478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_150 0.0 - - PREDICTED: uncharacterized protein LOC105630208 [Jatropha curcas]
2 Hb_000025_030 0.0692548673 - - transcription factor, putative [Ricinus communis]
3 Hb_001472_060 0.0885426224 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
4 Hb_001143_190 0.0912995125 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
5 Hb_000808_050 0.0920845858 - - exonuclease, putative [Ricinus communis]
6 Hb_004007_220 0.1071571211 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
7 Hb_010931_070 0.1116134339 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
8 Hb_000136_110 0.1125526843 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
9 Hb_003531_080 0.1143755397 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
10 Hb_000046_040 0.1156109608 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001501_080 0.1163332134 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
12 Hb_002197_020 0.1168028329 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
13 Hb_000879_180 0.1191371691 - - XPA-binding protein, putative [Ricinus communis]
14 Hb_000637_110 0.1196510934 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
15 Hb_007416_330 0.1204489991 - - PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
16 Hb_000599_180 0.1207181219 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000723_200 0.1209524501 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
18 Hb_000300_500 0.1215516408 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
19 Hb_005000_190 0.1220176805 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
20 Hb_005463_130 0.1226142196 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_000019_150 Hb_000019_150 Hb_000025_030 Hb_000025_030 Hb_000019_150--Hb_000025_030 Hb_001472_060 Hb_001472_060 Hb_000019_150--Hb_001472_060 Hb_001143_190 Hb_001143_190 Hb_000019_150--Hb_001143_190 Hb_000808_050 Hb_000808_050 Hb_000019_150--Hb_000808_050 Hb_004007_220 Hb_004007_220 Hb_000019_150--Hb_004007_220 Hb_010931_070 Hb_010931_070 Hb_000019_150--Hb_010931_070 Hb_000025_030--Hb_000808_050 Hb_000094_280 Hb_000094_280 Hb_000025_030--Hb_000094_280 Hb_000025_030--Hb_001143_190 Hb_001450_050 Hb_001450_050 Hb_000025_030--Hb_001450_050 Hb_007416_330 Hb_007416_330 Hb_000025_030--Hb_007416_330 Hb_003531_080 Hb_003531_080 Hb_001472_060--Hb_003531_080 Hb_004097_130 Hb_004097_130 Hb_001472_060--Hb_004097_130 Hb_021409_180 Hb_021409_180 Hb_001472_060--Hb_021409_180 Hb_001472_060--Hb_000808_050 Hb_001205_120 Hb_001205_120 Hb_001472_060--Hb_001205_120 Hb_002809_050 Hb_002809_050 Hb_001143_190--Hb_002809_050 Hb_002909_140 Hb_002909_140 Hb_001143_190--Hb_002909_140 Hb_001004_070 Hb_001004_070 Hb_001143_190--Hb_001004_070 Hb_001143_190--Hb_007416_330 Hb_000141_250 Hb_000141_250 Hb_000808_050--Hb_000141_250 Hb_002542_020 Hb_002542_020 Hb_000808_050--Hb_002542_020 Hb_008511_130 Hb_008511_130 Hb_000808_050--Hb_008511_130 Hb_000599_180 Hb_000599_180 Hb_000808_050--Hb_000599_180 Hb_006817_010 Hb_006817_010 Hb_000808_050--Hb_006817_010 Hb_002997_080 Hb_002997_080 Hb_004007_220--Hb_002997_080 Hb_001269_230 Hb_001269_230 Hb_004007_220--Hb_001269_230 Hb_027472_120 Hb_027472_120 Hb_004007_220--Hb_027472_120 Hb_001047_220 Hb_001047_220 Hb_004007_220--Hb_001047_220 Hb_009646_030 Hb_009646_030 Hb_004007_220--Hb_009646_030 Hb_002684_040 Hb_002684_040 Hb_004007_220--Hb_002684_040 Hb_170416_010 Hb_170416_010 Hb_010931_070--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_010931_070--Hb_001025_120 Hb_004052_080 Hb_004052_080 Hb_010931_070--Hb_004052_080 Hb_000567_070 Hb_000567_070 Hb_010931_070--Hb_000567_070 Hb_005000_170 Hb_005000_170 Hb_010931_070--Hb_005000_170 Hb_000144_070 Hb_000144_070 Hb_010931_070--Hb_000144_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3246 9.9772 27.9201 19.3375 17.8314 19.7935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8215 10.6395 28.4087 10.7786 11.7176

CAGE analysis