Hb_001143_190

Information

Type -
Description -
Location Contig1143: 179141-189801
Sequence    

Annotation

kegg
ID rcu:RCOM_0563460
description ubiquitin-protein ligase, putative
nr
ID XP_012078292.1
description PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
swissprot
ID Q5VRH9
description U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1
trembl
ID A0A067KM12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12131 PE=4 SV=1
Gene Ontology
ID GO:0005515
description armadillo beta-catenin-like c2 calcium lipid-binding domain protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04348: 180017-182516 , PASA_asmbl_04349: 181640-181874 , PASA_asmbl_04350: 182527-183135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_190 0.0 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
2 Hb_000019_150 0.0912995125 - - PREDICTED: uncharacterized protein LOC105630208 [Jatropha curcas]
3 Hb_002809_050 0.0932126389 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
4 Hb_002909_140 0.0976265331 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
5 Hb_001004_070 0.0990500392 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007416_330 0.1002095436 - - PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
7 Hb_000025_030 0.1013988572 - - transcription factor, putative [Ricinus communis]
8 Hb_003206_090 0.1026332944 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
9 Hb_006017_010 0.1052764232 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
10 Hb_000212_380 0.1068230031 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
11 Hb_000352_120 0.1110864825 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
12 Hb_000571_110 0.1128283201 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
13 Hb_000213_010 0.114776333 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
14 Hb_001221_080 0.1150606531 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
15 Hb_000723_200 0.115242703 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
16 Hb_000096_010 0.1166349805 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
17 Hb_012022_090 0.1194289399 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
18 Hb_028089_010 0.1208766126 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
19 Hb_002276_170 0.1209066359 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
20 Hb_000330_100 0.1225299983 - - hypothetical protein VITISV_011650 [Vitis vinifera]

Gene co-expression network

sample Hb_001143_190 Hb_001143_190 Hb_000019_150 Hb_000019_150 Hb_001143_190--Hb_000019_150 Hb_002809_050 Hb_002809_050 Hb_001143_190--Hb_002809_050 Hb_002909_140 Hb_002909_140 Hb_001143_190--Hb_002909_140 Hb_001004_070 Hb_001004_070 Hb_001143_190--Hb_001004_070 Hb_007416_330 Hb_007416_330 Hb_001143_190--Hb_007416_330 Hb_000025_030 Hb_000025_030 Hb_001143_190--Hb_000025_030 Hb_000019_150--Hb_000025_030 Hb_001472_060 Hb_001472_060 Hb_000019_150--Hb_001472_060 Hb_000808_050 Hb_000808_050 Hb_000019_150--Hb_000808_050 Hb_004007_220 Hb_004007_220 Hb_000019_150--Hb_004007_220 Hb_010931_070 Hb_010931_070 Hb_000019_150--Hb_010931_070 Hb_022115_020 Hb_022115_020 Hb_002809_050--Hb_022115_020 Hb_000260_010 Hb_000260_010 Hb_002809_050--Hb_000260_010 Hb_000213_010 Hb_000213_010 Hb_002809_050--Hb_000213_010 Hb_006634_070 Hb_006634_070 Hb_002809_050--Hb_006634_070 Hb_003177_030 Hb_003177_030 Hb_002809_050--Hb_003177_030 Hb_006938_080 Hb_006938_080 Hb_002809_050--Hb_006938_080 Hb_007803_050 Hb_007803_050 Hb_002909_140--Hb_007803_050 Hb_000212_380 Hb_000212_380 Hb_002909_140--Hb_000212_380 Hb_012498_010 Hb_012498_010 Hb_002909_140--Hb_012498_010 Hb_001221_080 Hb_001221_080 Hb_002909_140--Hb_001221_080 Hb_010174_040 Hb_010174_040 Hb_002909_140--Hb_010174_040 Hb_002169_050 Hb_002169_050 Hb_002909_140--Hb_002169_050 Hb_001936_130 Hb_001936_130 Hb_001004_070--Hb_001936_130 Hb_005291_050 Hb_005291_050 Hb_001004_070--Hb_005291_050 Hb_003025_100 Hb_003025_100 Hb_001004_070--Hb_003025_100 Hb_001004_070--Hb_012498_010 Hb_027380_220 Hb_027380_220 Hb_001004_070--Hb_027380_220 Hb_024128_020 Hb_024128_020 Hb_001004_070--Hb_024128_020 Hb_007894_110 Hb_007894_110 Hb_007416_330--Hb_007894_110 Hb_006017_010 Hb_006017_010 Hb_007416_330--Hb_006017_010 Hb_007416_330--Hb_001221_080 Hb_109980_010 Hb_109980_010 Hb_007416_330--Hb_109980_010 Hb_001408_140 Hb_001408_140 Hb_007416_330--Hb_001408_140 Hb_114310_090 Hb_114310_090 Hb_007416_330--Hb_114310_090 Hb_000025_030--Hb_000808_050 Hb_000094_280 Hb_000094_280 Hb_000025_030--Hb_000094_280 Hb_001450_050 Hb_001450_050 Hb_000025_030--Hb_001450_050 Hb_000025_030--Hb_007416_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.32301 1.46073 2.56005 3.14193 3.0262 2.72966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40415 1.43127 4.99952 2.15578 1.93028

CAGE analysis