Hb_002169_050

Information

Type -
Description -
Location Contig2169: 86790-92208
Sequence    

Annotation

kegg
ID rcu:RCOM_1269170
description Inositol-tetrakisphosphate 1-kinase, putative (EC:2.7.1.134)
nr
ID XP_012081918.1
description PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
swissprot
ID O80568
description Inositol 1,3,4-trisphosphate 5/6-kinase 4 OS=Arabidopsis thaliana GN=ITPK4 PE=1 SV=2
trembl
ID A0A067KBA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19263 PE=4 SV=1
Gene Ontology
ID GO:0005622
description inositol-tetrakisphosphate 1-kinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22397: 74788-92118
cDNA
(Sanger)
(ID:Location)		 031_C14.ab1: 89946-92118 , 031_F22.ab1: 89960-92118

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002169_050 0.0 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
2 Hb_002026_150 0.0641534322 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
3 Hb_002909_140 0.0677334155 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
4 Hb_000614_240 0.0703081747 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
5 Hb_012498_010 0.0704726972 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
6 Hb_000011_060 0.0704933036 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
7 Hb_010142_020 0.0731404814 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000028_180 0.0731515722 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
9 Hb_001473_180 0.0735573688 - - glutathione reductase [Hevea brasiliensis]
10 Hb_013726_090 0.0741415005 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
11 Hb_002044_150 0.0747881155 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
12 Hb_000207_050 0.0753075812 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
13 Hb_000592_030 0.0760218853 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
14 Hb_002600_150 0.0766605243 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
15 Hb_000140_290 0.0777229431 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
16 Hb_011016_050 0.0794281603 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
17 Hb_000665_060 0.0794841658 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
18 Hb_000212_380 0.0801190323 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
19 Hb_001500_140 0.0809203736 - - pelota, putative [Ricinus communis]
20 Hb_000212_310 0.0812815888 - - hypothetical protein JCGZ_24350 [Jatropha curcas]

Gene co-expression network

sample Hb_002169_050 Hb_002169_050 Hb_002026_150 Hb_002026_150 Hb_002169_050--Hb_002026_150 Hb_002909_140 Hb_002909_140 Hb_002169_050--Hb_002909_140 Hb_000614_240 Hb_000614_240 Hb_002169_050--Hb_000614_240 Hb_012498_010 Hb_012498_010 Hb_002169_050--Hb_012498_010 Hb_000011_060 Hb_000011_060 Hb_002169_050--Hb_000011_060 Hb_010142_020 Hb_010142_020 Hb_002169_050--Hb_010142_020 Hb_002026_150--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_002026_150--Hb_001105_020 Hb_000366_200 Hb_000366_200 Hb_002026_150--Hb_000366_200 Hb_002026_150--Hb_000011_060 Hb_002026_150--Hb_000614_240 Hb_007803_050 Hb_007803_050 Hb_002909_140--Hb_007803_050 Hb_000212_380 Hb_000212_380 Hb_002909_140--Hb_000212_380 Hb_002909_140--Hb_012498_010 Hb_001221_080 Hb_001221_080 Hb_002909_140--Hb_001221_080 Hb_010174_040 Hb_010174_040 Hb_002909_140--Hb_010174_040 Hb_001999_310 Hb_001999_310 Hb_000614_240--Hb_001999_310 Hb_000614_240--Hb_010142_020 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000614_240--Hb_000011_060 Hb_002456_010 Hb_002456_010 Hb_000614_240--Hb_002456_010 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_005291_050 Hb_005291_050 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_012498_010--Hb_010142_020 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_000011_060--Hb_010142_020 Hb_000011_060--Hb_001105_020 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_010142_020--Hb_003683_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.47501 2.29164 2.75802 4.01088 2.79567 3.71511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.76173 2.47782 4.59689 5.417 3.43187

CAGE analysis