Hb_001450_050

Information

Type -
Description -
Location Contig1450: 70943-74730
Sequence    

Annotation

kegg
ID rcu:RCOM_1382930
description hypothetical protein
nr
ID XP_002522105.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7Y9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1382930 PE=4 SV=1
Gene Ontology
ID GO:0016740
description atp phosphoribosyltransferase regulatory subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11712: 70908-74746
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001450_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004369_020 0.0757484988 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
3 Hb_003728_080 0.0845608286 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
4 Hb_010139_040 0.091782194 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_002835_040 0.0965865891 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
6 Hb_000330_100 0.0971156844 - - hypothetical protein VITISV_011650 [Vitis vinifera]
7 Hb_148209_100 0.0973973553 - - phosphatidylinositol 4-kinase, putative [Ricinus communis]
8 Hb_009646_030 0.0979846536 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000025_030 0.103610281 - - transcription factor, putative [Ricinus communis]
10 Hb_028089_010 0.1048702497 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
11 Hb_008165_060 0.1064711992 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
12 Hb_004414_060 0.1068392769 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
13 Hb_005269_070 0.1096642019 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
14 Hb_004221_020 0.109954996 - - protein binding protein, putative [Ricinus communis]
15 Hb_188279_010 0.1104142466 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
16 Hb_000796_220 0.1111948535 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
17 Hb_002835_370 0.1114332593 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
18 Hb_003683_160 0.1123494093 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
19 Hb_002542_020 0.1137120331 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
20 Hb_000365_070 0.1138290072 - - PREDICTED: SWR1 complex subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001450_050 Hb_001450_050 Hb_004369_020 Hb_004369_020 Hb_001450_050--Hb_004369_020 Hb_003728_080 Hb_003728_080 Hb_001450_050--Hb_003728_080 Hb_010139_040 Hb_010139_040 Hb_001450_050--Hb_010139_040 Hb_002835_040 Hb_002835_040 Hb_001450_050--Hb_002835_040 Hb_000330_100 Hb_000330_100 Hb_001450_050--Hb_000330_100 Hb_148209_100 Hb_148209_100 Hb_001450_050--Hb_148209_100 Hb_004369_020--Hb_003728_080 Hb_000010_090 Hb_000010_090 Hb_004369_020--Hb_000010_090 Hb_000173_290 Hb_000173_290 Hb_004369_020--Hb_000173_290 Hb_004182_040 Hb_004182_040 Hb_004369_020--Hb_004182_040 Hb_000010_330 Hb_000010_330 Hb_004369_020--Hb_000010_330 Hb_003728_080--Hb_010139_040 Hb_006064_010 Hb_006064_010 Hb_003728_080--Hb_006064_010 Hb_048937_040 Hb_048937_040 Hb_003728_080--Hb_048937_040 Hb_009646_030 Hb_009646_030 Hb_003728_080--Hb_009646_030 Hb_003665_060 Hb_003665_060 Hb_003728_080--Hb_003665_060 Hb_004221_020 Hb_004221_020 Hb_010139_040--Hb_004221_020 Hb_000072_220 Hb_000072_220 Hb_010139_040--Hb_000072_220 Hb_010457_030 Hb_010457_030 Hb_010139_040--Hb_010457_030 Hb_010139_040--Hb_048937_040 Hb_002835_370 Hb_002835_370 Hb_010139_040--Hb_002835_370 Hb_004414_060 Hb_004414_060 Hb_002835_040--Hb_004414_060 Hb_005269_070 Hb_005269_070 Hb_002835_040--Hb_005269_070 Hb_004410_030 Hb_004410_030 Hb_002835_040--Hb_004410_030 Hb_004619_030 Hb_004619_030 Hb_002835_040--Hb_004619_030 Hb_000915_260 Hb_000915_260 Hb_002835_040--Hb_000915_260 Hb_002271_030 Hb_002271_030 Hb_002835_040--Hb_002271_030 Hb_000796_220 Hb_000796_220 Hb_000330_100--Hb_000796_220 Hb_002217_300 Hb_002217_300 Hb_000330_100--Hb_002217_300 Hb_046198_010 Hb_046198_010 Hb_000330_100--Hb_046198_010 Hb_000832_020 Hb_000832_020 Hb_000330_100--Hb_000832_020 Hb_028089_010 Hb_028089_010 Hb_000330_100--Hb_028089_010 Hb_002998_060 Hb_002998_060 Hb_148209_100--Hb_002998_060 Hb_011671_240 Hb_011671_240 Hb_148209_100--Hb_011671_240 Hb_001632_040 Hb_001632_040 Hb_148209_100--Hb_001632_040 Hb_002232_100 Hb_002232_100 Hb_148209_100--Hb_002232_100 Hb_148209_100--Hb_004369_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.29 5.81786 14.4635 12.3239 18.5097 17.5201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.72182 14.262 25.9187 13.6003 11.9471

CAGE analysis