Hb_004369_020

Information

Type -
Description -
Location Contig4369: 39500-44068
Sequence    

Annotation

kegg
ID rcu:RCOM_1078440
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012066558.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
swissprot
ID Q9LQ14
description Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2
trembl
ID A0A067L5U7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24372 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42476: 42844-43660 , PASA_asmbl_42478: 39528-44195
cDNA
(Sanger)
(ID:Location)		 050_J18.ab1: 39529-44195

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004369_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
2 Hb_003728_080 0.0556251282 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
3 Hb_001450_050 0.0757484988 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000010_090 0.0885199487 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
5 Hb_000173_290 0.0894411532 - - guanylate kinase, putative [Ricinus communis]
6 Hb_004182_040 0.0899559158 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
7 Hb_000010_330 0.0914869948 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
8 Hb_000796_220 0.0935834268 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
9 Hb_010139_040 0.0936773638 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_004414_060 0.0948336543 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
11 Hb_002835_040 0.0956041113 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
12 Hb_001019_190 0.0956867426 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002200_080 0.0964007842 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
14 Hb_003665_060 0.0977523228 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
15 Hb_003195_070 0.0980909972 - - Uncharacterized protein isoform 1 [Theobroma cacao]
16 Hb_002506_020 0.0989884042 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
17 Hb_001675_180 0.0991726167 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
18 Hb_004109_090 0.0997471872 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_002276_170 0.1004771136 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
20 Hb_004907_080 0.1005866697 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004369_020 Hb_004369_020 Hb_003728_080 Hb_003728_080 Hb_004369_020--Hb_003728_080 Hb_001450_050 Hb_001450_050 Hb_004369_020--Hb_001450_050 Hb_000010_090 Hb_000010_090 Hb_004369_020--Hb_000010_090 Hb_000173_290 Hb_000173_290 Hb_004369_020--Hb_000173_290 Hb_004182_040 Hb_004182_040 Hb_004369_020--Hb_004182_040 Hb_000010_330 Hb_000010_330 Hb_004369_020--Hb_000010_330 Hb_010139_040 Hb_010139_040 Hb_003728_080--Hb_010139_040 Hb_006064_010 Hb_006064_010 Hb_003728_080--Hb_006064_010 Hb_048937_040 Hb_048937_040 Hb_003728_080--Hb_048937_040 Hb_009646_030 Hb_009646_030 Hb_003728_080--Hb_009646_030 Hb_003665_060 Hb_003665_060 Hb_003728_080--Hb_003665_060 Hb_001450_050--Hb_003728_080 Hb_001450_050--Hb_010139_040 Hb_002835_040 Hb_002835_040 Hb_001450_050--Hb_002835_040 Hb_000330_100 Hb_000330_100 Hb_001450_050--Hb_000330_100 Hb_148209_100 Hb_148209_100 Hb_001450_050--Hb_148209_100 Hb_000618_030 Hb_000618_030 Hb_000010_090--Hb_000618_030 Hb_000299_040 Hb_000299_040 Hb_000010_090--Hb_000299_040 Hb_000053_130 Hb_000053_130 Hb_000010_090--Hb_000053_130 Hb_000451_010 Hb_000451_010 Hb_000010_090--Hb_000451_010 Hb_073171_040 Hb_073171_040 Hb_000010_090--Hb_073171_040 Hb_000010_090--Hb_003728_080 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000206_210 Hb_000206_210 Hb_000173_290--Hb_000206_210 Hb_000342_130 Hb_000342_130 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040 Hb_003125_160 Hb_003125_160 Hb_004182_040--Hb_003125_160 Hb_000690_130 Hb_000690_130 Hb_004182_040--Hb_000690_130 Hb_004182_040--Hb_003665_060 Hb_004182_040--Hb_003728_080 Hb_001350_010 Hb_001350_010 Hb_004182_040--Hb_001350_010 Hb_000291_220 Hb_000291_220 Hb_004182_040--Hb_000291_220 Hb_007904_200 Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_000010_330--Hb_010457_030 Hb_019280_040 Hb_019280_040 Hb_000010_330--Hb_019280_040 Hb_000010_330--Hb_003665_060 Hb_000010_330--Hb_002200_080 Hb_000010_330--Hb_048937_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20763 0.719588 1.81355 2.14367 3.13691 3.30589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87312 2.43034 3.45892 1.64519 2.29356

CAGE analysis