Hb_010139_040

Information

Type -
Description -
Location Contig10139: 47070-48443
Sequence    

Annotation

kegg
ID rcu:RCOM_0442790
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002532784.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID P0C043
description Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1
trembl
ID B9T3G5
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0442790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00680: 46781-51689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010139_040 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_004221_020 0.0464480349 - - protein binding protein, putative [Ricinus communis]
3 Hb_000072_220 0.0574741995 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
4 Hb_010457_030 0.0612208757 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
5 Hb_048937_040 0.0623103024 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
6 Hb_003728_080 0.0624758869 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
7 Hb_002835_370 0.0666520686 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
8 Hb_000010_330 0.0694574767 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
9 Hb_007075_040 0.0713116889 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
10 Hb_000392_300 0.0722069817 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
11 Hb_009646_030 0.0731452627 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000029_050 0.0749405477 - - expressed protein, putative [Ricinus communis]
13 Hb_000289_060 0.0757318237 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
14 Hb_000165_250 0.075872945 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
15 Hb_001493_030 0.0783719214 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
16 Hb_001248_060 0.0792442388 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001104_180 0.079648371 - - PREDICTED: ribosome production factor 2 homolog isoform X1 [Jatropha curcas]
18 Hb_000879_200 0.0797192849 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
19 Hb_001926_030 0.0801782506 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
20 Hb_000453_170 0.0805523286 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010139_040 Hb_010139_040 Hb_004221_020 Hb_004221_020 Hb_010139_040--Hb_004221_020 Hb_000072_220 Hb_000072_220 Hb_010139_040--Hb_000072_220 Hb_010457_030 Hb_010457_030 Hb_010139_040--Hb_010457_030 Hb_048937_040 Hb_048937_040 Hb_010139_040--Hb_048937_040 Hb_003728_080 Hb_003728_080 Hb_010139_040--Hb_003728_080 Hb_002835_370 Hb_002835_370 Hb_010139_040--Hb_002835_370 Hb_004221_020--Hb_002835_370 Hb_000289_060 Hb_000289_060 Hb_004221_020--Hb_000289_060 Hb_000165_250 Hb_000165_250 Hb_004221_020--Hb_000165_250 Hb_004221_020--Hb_000072_220 Hb_002025_020 Hb_002025_020 Hb_004221_020--Hb_002025_020 Hb_000072_220--Hb_002835_370 Hb_172632_080 Hb_172632_080 Hb_000072_220--Hb_172632_080 Hb_009548_020 Hb_009548_020 Hb_000072_220--Hb_009548_020 Hb_001675_180 Hb_001675_180 Hb_000072_220--Hb_001675_180 Hb_000010_330 Hb_000010_330 Hb_010457_030--Hb_000010_330 Hb_010457_030--Hb_048937_040 Hb_019280_040 Hb_019280_040 Hb_010457_030--Hb_019280_040 Hb_007904_200 Hb_007904_200 Hb_010457_030--Hb_007904_200 Hb_000365_390 Hb_000365_390 Hb_010457_030--Hb_000365_390 Hb_003175_010 Hb_003175_010 Hb_010457_030--Hb_003175_010 Hb_048937_040--Hb_003175_010 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_048937_040--Hb_000010_330 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_004369_020 Hb_004369_020 Hb_003728_080--Hb_004369_020 Hb_006064_010 Hb_006064_010 Hb_003728_080--Hb_006064_010 Hb_003728_080--Hb_048937_040 Hb_009646_030 Hb_009646_030 Hb_003728_080--Hb_009646_030 Hb_003665_060 Hb_003665_060 Hb_003728_080--Hb_003665_060 Hb_002835_370--Hb_002025_020 Hb_001680_010 Hb_001680_010 Hb_002835_370--Hb_001680_010 Hb_002835_370--Hb_009548_020 Hb_028089_010 Hb_028089_010 Hb_002835_370--Hb_028089_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.18538 1.05385 1.05543 1.07697 1.76307 2.03027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.968026 1.49587 1.93486 0.956568 1.02021

CAGE analysis