Hb_002998_060

Information

Type -
Description -
Location Contig2998: 66318-70912
Sequence    

Annotation

kegg
ID rcu:RCOM_1538620
description vacuolar protein sorting, putative
nr
ID XP_012078446.1
description PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
swissprot
ID Q94KJ7
description Vacuolar protein-sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=1 SV=1
trembl
ID A0A067KC36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13133 PE=4 SV=1
Gene Ontology
ID GO:0005829
description vacuolar protein-sorting-associated protein 33 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31329: 66208-67732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002998_060 0.0 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
2 Hb_000046_320 0.0824580925 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
3 Hb_000656_040 0.0841510188 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
4 Hb_003177_030 0.0846748034 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
5 Hb_000050_200 0.0859840845 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
6 Hb_000019_030 0.0884321628 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
7 Hb_000096_010 0.0917447704 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
8 Hb_001711_020 0.0919879035 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
9 Hb_000749_220 0.0922052622 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
10 Hb_000468_060 0.0936318532 - - ku P70 DNA helicase, putative [Ricinus communis]
11 Hb_011671_240 0.0936579387 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
12 Hb_001009_270 0.0946123285 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
13 Hb_001818_090 0.0967802939 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000403_060 0.0982119476 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
15 Hb_001159_130 0.0986642098 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
16 Hb_013726_020 0.098925921 - - ara4-interacting protein, putative [Ricinus communis]
17 Hb_000777_040 0.1004036036 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
18 Hb_002169_040 0.1006940649 - - unknown [Populus trichocarpa]
19 Hb_000579_140 0.101348628 - - conserved hypothetical protein [Ricinus communis]
20 Hb_019280_040 0.1021253032 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002998_060 Hb_002998_060 Hb_000046_320 Hb_000046_320 Hb_002998_060--Hb_000046_320 Hb_000656_040 Hb_000656_040 Hb_002998_060--Hb_000656_040 Hb_003177_030 Hb_003177_030 Hb_002998_060--Hb_003177_030 Hb_000050_200 Hb_000050_200 Hb_002998_060--Hb_000050_200 Hb_000019_030 Hb_000019_030 Hb_002998_060--Hb_000019_030 Hb_000096_010 Hb_000096_010 Hb_002998_060--Hb_000096_010 Hb_007904_260 Hb_007904_260 Hb_000046_320--Hb_007904_260 Hb_000985_030 Hb_000985_030 Hb_000046_320--Hb_000985_030 Hb_000777_040 Hb_000777_040 Hb_000046_320--Hb_000777_040 Hb_000749_220 Hb_000749_220 Hb_000046_320--Hb_000749_220 Hb_000046_320--Hb_003177_030 Hb_000329_030 Hb_000329_030 Hb_000656_040--Hb_000329_030 Hb_002774_060 Hb_002774_060 Hb_000656_040--Hb_002774_060 Hb_032208_090 Hb_032208_090 Hb_000656_040--Hb_032208_090 Hb_000579_140 Hb_000579_140 Hb_000656_040--Hb_000579_140 Hb_000045_090 Hb_000045_090 Hb_000656_040--Hb_000045_090 Hb_003177_030--Hb_000749_220 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_003177_030--Hb_001159_130 Hb_003177_030--Hb_000019_030 Hb_003994_230 Hb_003994_230 Hb_000050_200--Hb_003994_230 Hb_000200_020 Hb_000200_020 Hb_000050_200--Hb_000200_020 Hb_000468_060 Hb_000468_060 Hb_000050_200--Hb_000468_060 Hb_002681_100 Hb_002681_100 Hb_000050_200--Hb_002681_100 Hb_001575_090 Hb_001575_090 Hb_000050_200--Hb_001575_090 Hb_001828_150 Hb_001828_150 Hb_000050_200--Hb_001828_150 Hb_005357_080 Hb_005357_080 Hb_000019_030--Hb_005357_080 Hb_000019_030--Hb_001575_090 Hb_000120_670 Hb_000120_670 Hb_000019_030--Hb_000120_670 Hb_011671_240 Hb_011671_240 Hb_000019_030--Hb_011671_240 Hb_000019_030--Hb_000468_060 Hb_000618_040 Hb_000618_040 Hb_000019_030--Hb_000618_040 Hb_000538_070 Hb_000538_070 Hb_000096_010--Hb_000538_070 Hb_000096_010--Hb_000749_220 Hb_000130_050 Hb_000130_050 Hb_000096_010--Hb_000130_050 Hb_000096_010--Hb_003177_030 Hb_002809_050 Hb_002809_050 Hb_000096_010--Hb_002809_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25899 0.576967 2.00098 2.32033 1.71667 2.53462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8127 2.63593 3.39884 2.09496 1.11529

CAGE analysis